RNA id: TU155273


Basic Information

Item Value
RNA id TU155273
length 1236
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G123845
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 18051097 ~ 18052332 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tttttattgataacatttgtcttttttgagAATAACAGCATTTAAAATTCCTGAAAGTACAACCCAATGCTAATGGTGTTACCAGTGTCTTTGACATATCcttcatctttatttttgttgaacttttttcattttttaaaaaaggttaaCATGACTATTCTTATTGCATACATaccatttacaatttacaagtAGCATACTTTCCCTTTATGGTGAAATGGAGTAAAATccattgtgtaaataaaaacagttatgGACATATCTGCtgttaatacattcaaatgagaTATTCAAGTTACTGACAAGAAGTGCACACATACAACAGCAAATAATATcaactgtttgttagttttttaacTAAAATGCTAAAGTAAAGAATAAATAGGCTTTTTTCTCATTAAGACACATGCATTATTGTTCCATGTGCTTtgcttcaaaatatatacaagatCTATTATATCATGTTCGCCACATGTAGAACTAGGTTAAAACAGATCAAATCATGAACTATTTACAATAAACCCTCAGTGCGAGTGATACTTCAGTCATGGCTTGGCAGACCAATGTTAAGTCAGTCAGATGCTGAAACACTTATGCTCAGGCACTAATACACAGGTCAAAGCTTGCCATTGTGCCATCTTACAAAAAATTGGCTTTAAAGCTAACATTACAGTATCAGATGCTTTCAATCTGTCCTCACAAGGAAAATCGCTCAGGTTAATCTATACTGGTGCTTCTGTAccactaaaataaatgactatCCGCTCCTACATCAATGGAAACAGGCCTCACACAAGAGCTGTCAGACATAGGCCTCAATGGTAAAAATGGAGATTATCGTTGATTATCAACTTAATTTCTTCTGCCCCTAATTCAAGTCTTTGACAACTGCATTTCCTCAAAGTTAAactagtatatatacatatatatatatatatatataaacaaaaagtatattggtctatcacaaaaatatatatatatataagcttgtGTTTgagttaaaaacacattcattcacTTCAAATGTCCCATCGCTGCAGCACTCCTGTCCAGACTCCCGTGCGTCTCTTCCCTTGGTTTTTGGTTGCAGCTTTTGGTCTGCAAATGTTGTGCAAGCACACTAGCAGTTGGGAGTCTACCACCCCCACCAGCGAATTACTTTTAGCTTTCAGTGAAACTTCAACAAAACCGGTGTTGCTGTGACCCATATATTAATATAGTTGGACATAATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155254 lncRNA downstream 56334 17933464 ~ 17994763 (-) True AMCG00002533
TU155242 lncRNA downstream 235631 17811518 ~ 17815466 (-) True G123824
TU155213 lncRNA downstream 354593 17690038 ~ 17696504 (-) False AMCG00002524
TU155202 lncRNA downstream 375987 17660067 ~ 17675110 (-) True G123788
TU155101 lncRNA downstream 812553 17234370 ~ 17238544 (-) True G123705
TU155304 lncRNA upstream 153336 18205668 ~ 18206132 (-) True G123876
TU155370 lncRNA upstream 416902 18469234 ~ 18469607 (-) True G123926
TU155412 lncRNA upstream 532377 18584709 ~ 18585930 (-) True G123961
TU155446 lncRNA upstream 729813 18782145 ~ 18782366 (-) True G123981
TU155557 lncRNA upstream 1231546 19283878 ~ 19284293 (-) True G124068
AMCG00002533 mRNA downstream 9524 17992061 ~ 18041573 (-) False AMCG00002533
AMCG00002531 mRNA downstream 148287 17876005 ~ 17902810 (-) True AMCG00002531
AMCG00002530 mRNA downstream 194029 17838579 ~ 17857068 (-) True AMCG00002530
AMCG00002524 mRNA downstream 344808 17690008 ~ 17706289 (-) True AMCG00002524
AMCG00002523 mRNA downstream 365800 17678022 ~ 17685297 (-) True AMCG00002523
AMCG00002532 mRNA upstream 6200 18058532 ~ 18062065 (-) True AMCG00002532
AMCG00002536 mRNA upstream 119799 18172131 ~ 18182627 (-) True AMCG00002536
AMCG00002539 mRNA upstream 151045 18203377 ~ 18204483 (-) True AMCG00002539
AMCG00002537 mRNA upstream 163463 18215795 ~ 18224850 (-) True AMCG00002537
AMCG00002538 mRNA upstream 174636 18226968 ~ 18241221 (-) True AMCG00002538
TU155250 other downstream 61632 17922452 ~ 17989465 (-) True G123829
TU154950 other downstream 1211375 16836156 ~ 16839722 (-) True G123585
TU154543 other downstream 3104786 14941260 ~ 14946311 (-) True G123263
TU154299 other downstream 4396861 13649228 ~ 13654236 (-) False AMCG00002421
TU154046 other downstream 5021691 13028197 ~ 13029406 (-) False G122862
TU156333 other upstream 5033662 23085994 ~ 23153164 (-) True G124719
TU156342 other upstream 5129589 23181921 ~ 23185168 (-) True AMCG00002629
TU156457 other upstream 6209233 24261565 ~ 24261823 (-) True G124829
TU156479 other upstream 6239455 24291787 ~ 24339566 (-) True G124848
TU156949 other upstream 8251550 26303882 ~ 26305923 (-) False AMCG00002688

Expression Profile