RNA id: TU1087


Basic Information

Item Value
RNA id TU1087
length 5541
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G907
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 5550745 ~ 5556306 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACCAGTCCAAATAACcatgaaaatgagaaaacaaggACCTCTAAACAACAATTTTATTGCAGCACTTAATTTTAACTGAGATACATTATCAAACGGCTTGAAAGCCGTACATTAGAGTGTTAGCTGTTATTAAGTACAATTAGAAAGCTGTTGTCTTTGCAAAGTCAGTATAAACCTCCATTTCAACCTTATAACACAGCAAATCCAACTCCAAAAGCAGtcttttaaatttcaattaagCCAGCCAGCAGTATGCACGGTATGCACAACTTTTGCCACATACTACATCCGCATAGCTGTAATACTGTTTTTCAAACAAGATtttcacacactgaaacacaagtTCCTGTTACATGTTTGCATTAAGCATTCCCAGTTTAGCTGcaagagaaaatattttttatgcaCAACAAGAACATATATTGCTTTTACAAACAGACTcacacaaattaagaaaaacaacaatcataaGGTAAGAGTACATAAGGTTATTTCATTCAATAAGTGCAATCCCGGTTTCTGCGAGTGGATTGGCATACCAAAGCAATGTGatggaaaaaatacagtttgaagCTTTCAAAGTGCTTTTCAGTTATATGAGAGAAACATCAGATATTTTATGAAACCATACCTATGCAAGATACCTCTTCTCTAAATGAAAGGAAACCAGTTTGCATGGGTGACATAGCTTTTTGACAGTATTGGACAGGAgcacaaaaaataatgacattgttttttctctaaTATTGGCAACAGAAATGCAGAATGACAATAAAGCCAAATGCAACTGCAGTGCAATAAAGTAATGCAGAGTAGAGAAACGGGATGACAGTTAGACTCCAAACAGAGGCTCACAACAAAAAGAAGGGAGGAGTGAGGGGTGTAATTGCTTTTTCATGAACTGCTTAGCAGGGTCATAAACTATTTTTAGTTGGTGCTTACCATACttggaaaaaaacactgcatgcaCTACACTCTTTTTCCAACTAACCATAATGAGCAGCTAAAAGACGTGTTTCTTGTAACCAATGAATTAATGCATGATATTCTACAGAGCTGTAAAAAGAATAGGAATGTTATCTCAAAAAAGACCTGTACTGCCAAGTGAAGGACtctattgattgatttacaGACTGATTGAGTTGTTTCAAATTCTGACATTGAAGTGTAGAATATGAGTGTAGGGGGGTGTCCTTCTAAAGCAAAGAATTTcaataacaattaaatcaatatggGCCTCTCTGCAAATGCATACATCTAAAGGTATAGGTTGTGTGGATTGGTGTATTACAAAGAAATTTTAGGGGTGGGTGGATTTGCCAAAATGTAGGAGTTTGACGATACCTTTAATAAAGGACTTTTTAATCCATTAACCATTCATCAAAAAGCATTGCAACACCTTTCCTATATCTAGTAAACTGTGATGGCAGCATATGCCATTAGATTTAATTTCCATCCAGATTGTGAGAAGaatgaaattgattaattaagacACAGTATGAAAATAAGTCACATTCTACTAAAACACGGGCACCTCTTAATCATCTCTACTGAGGACTGAGGCGTGGTGTTTTTCGTCTTGTAAGAATGaatccatgtttttatttatagattaaaTGTCATGCAGCAAAACAGGATTACCAACACATGCCTCAGTTAAACAGCTGGCCTGGTATTTTGCAGCCAACAGTTTCAAATGATCGAgtcacagaaaaatatataattgtttctgACAGCCTGACAAGCCTGAGTTTGTTGCATATTGAGAAATGGTTTAAATCACAACAAATGGAAGGACCTAGGTTTATGGTCATGATTTTGCTCCagtcaaataaaaagaaaaaatgactGTCCTACTAAAGAGTCTTATACAACAACTGATAGCACATGCAAGAGAAAACTACATTGGTATGGAATTTATGGATAATGTAATGAATGGTACCTTgttctctatattgttgtaaaacttaaattatacaaaaatgtaagaaCGTTTACAAAAGAAGCATTGGatccatcatgctcgtttgttAGATAGTAAAGGAATGTTCTGAGGATGACATCCAGGCTTTTTTAATGATCCCAAGGAGACAGCATCAAGACTAGGAATATATGAGATGCAGCTTTTGTTTCGTACAATAAAGGATtcttcaaatataaaatgtataatgatggTTCTTTTTACTTCTGGTGTTGACTACTTTGATTTCTTCTGTATTATTAcataggaatatatatattatgctgcctggaaaacactgttttgcacatttctttaaaataggCAATGCCCTGAACTAACAGTAGTTAAAGAAGTGcataaaaactggaaaacaaattactttaaattaaagtgtAGCATACACGTGTTCCTTATATGAGTTAATAACTGAATTCCGTTTCACTCaggaaattaatttcaaaataatattctgCTATAGGCTTATGActggattttaaaaagtgtgcAAGCCTAAAACCTCATTGACTGTCTATTGCTTTATGCCTGTGAataccatttaaaatcaaacccTTAGCCTGTATGACAATTAGATTTCTGAACTTTgcatgcaaacaaacaacatttgttttcatttaaattacaaatcttACCAAAAATACACATCAGCCAATGTTCTTAATTGAACTCATCAGATCACCCACTTAACTCATTTTAGTCACTCGTTGATATAAATCCATCTTTCAGGAGATGCGCACAATCCCATTTGCACACGACTATTGCGCACTATTTTCTGCCTTCTCGGGGAGGCTCAGTATGAAGGGAAAGAGGACGCCTTTAGCTTCAAAGGGGGCTTTCAACTCCTCTGGACCAAATCTCGCCTCTTCCTCCTCTATGGTGAACTGCAGTGTGTGGGACTTGTTGACACAGTAAATGCAGCTGCCAATGACTGCGCATCTGAAAGGCAACGGGTTGCTCTGTCGCAACGAGGCGCTTTCCTTCCACAGTTTCACGATGGTGTTGTATCTGAACACACTGACACCCTGGTCGCGGTTCACGTCGAACCTGTAAATGAAATTTTTAAAGGCCACCATGTCTGTGGATTTCTTCCTGCTGTTGTTGTAGGGGCATTCCTGCCACTCGTCCCTCTTGGGGTCGTATTTGAGCAGGCGATAGAAGAGGGAGCCCCCAGACACATAAATCTCCCCGTTGCAGGTGGTCGCTTCGTGCGCCACGGCGAAGGCGCCTTTAGGCAGCGGCGCCACTGGGGTCCATCTGTCCATCCGGGGATCGTACTTCTCCACCGTGAACAGACACTCGCCTCCTATCGCATACAGATACCCGTCTACAGACACCAGTTTTAGCTGTGACCTTGGCTGATTCAACGGTCTGACTTCGCTCCAGCTATCAGTGATGGGGTTATAGCAAAACACCTTATCCGAGAGCTTGCCTTTGTCGCCATATCCCTTTATTCCACCTGCAACGAATAGGTAGTTGTACATGGAGCAGATGCCACAGCCCTTTGTGTTGATATCCTCCGGCATGCGAGTGAGCGCTCTCCAGTCCTTCACTGTTTCGTTGTAGTAATATATTAGATGGTTTTCTTCAAAGGAAACTATAGACAGAGGGCTCTGGGGACGGCTATTATCTCGGCTTTGAGGTCTGCTCCCAACACGATCATAAACATCATTGATTTCAGCCACCATTAAGCACTGCTTGCCTTCCATTCTTGTTTTCAGAATCAGATCCCGTTCAGATCCCGTTAACCGCCCATAGACAGCAGGGTCCCTCAATATCTGCAGAAAGTGGTCGCTCATGAACCTGTAAGCCGTCTCTTTCAGTTCGTTTAATCGCTGTTTTTTAGCGATGGTTAAGATGTCATAGCAGTTCTCGGTGCTGATCTGTCCCGACATTGTATCCATTGCTGTCTCAACTGCGCAGGGGATCTGGAGAATTTTCGCGCCGGTAATGACCTCCACCACGTTGTCCTTGGTCACGTCCATTCTGGAGGAATAAATATAATCCACCAAAACCTTTAAGGTCGTATAACTGACGCCTTTCACCTTCAGGATGTCTCTCGACTGCCGTGCCTTGAAATAGTCACTCTTCTCTGCCAAGATGGATTTGTGCGCCCGGATTTTCTTTCCAGCCACTTCAATCACCAAATCCGGCTCTTCCTTAAAACTATACCGATTTCTGACTCCGTTTCCACTCTCCCACCGTCCTTGAGTCGATTCCAGCCCCGAGTTTCCTTGAATTGTGTCAAATCCCCTCTGTGCGGGTCCGGATCCCGCACCGCCCAGATGACCCGGCTCATGTGTTGGCTGCGCTCCCGCAGAGATACAATAAGTGTCAGGCGCAAAggtcccctcctcctcctcctcctccagcccGGAGTTGGCATTATTAATCTGACCCTGACTTTTCACAATTCTGCTCTCGTTAGATAATAGAGAGTCGCTTTCAGTTTCGTCCTTGGTTTCGATGGAGAAGCATAAGGAATGGCTCAGACCGCAGGGCACTTTCGCCCGGGAGCCATTCACCTCGGTGCTTCCATTCCTGCTAATGGGATTGTTCTGGTTTGGACCTGGGTCTTGTGATCGCAACTGAGAAGTCCTTGAAGAAATGTGCATCTTTTGGAAATCGGACTCCTGAAACAAGGACCATGGCTTTGGGTTTGCATTGGCATCACCCGTGCTGGCGCTTCTCGCGTCGTGCTCGTACTGCTCCCTGTCCGAGCTCTGGGGCCCCTTGCCCAGCGGGTCCACTGCAGCGCCCGGGCCCTTGCTGGCCACTCGGGCTCTCTGTCGACAGCAAGCCTGATGCTCCTGAGGAGTTGTCATTTCTGCCAGATTTCCAACAGCCTCCAGTTGCAACACAGCGCTTTTACTTAACCGATCTGCCCCTTGAGAAACAAGAGGTGTGTCAGCATTGGCAGCGTGGAAACTGAACCCTGCCTCCGAAGTGAACTCCACACGGGGGTGGGTGACAGTCGCACCCTGCACTCCTTCATTCATCCTTTCTTTCTCCAGTTTTAATGTCTGAGCTGTTCCTCGGCGGGTAAAGTCGTTATTCTGCAAAATGGGGGTTTGCATTGTCTTTTCGcgtttaaatggaaaatgttacCACACCGAGCTCTATGGTCATCTGGCTTTGGTGTCTTTCTTGGAAGACTCCCTCCCACACACAGTCTCAATAGgcgaattacattttaatgacagtAATCATTTTTGTCCTGGTGTGAAGTTTCCAGGGAGAAACGcctttgaattgttttaaagGTTAACAGTGTGGAaagcattgcattgcatataAAGAGCACTCACACCGCTATTATGTGGAATTAAACGCAAACTGTAACATGGTGAGATggaataattgttgttttgattCTATATTTCAAAAAGCAGAAATCTGATATCCAGATATCGTTTTTCAGATTGTTGTCCTAGGAGGAGGCATGGGTGCACAGCCCCTTCAAGTTCCTAATAAATTGGGTGATGATTCAGTGCAAGAATAATCCAAAAGGATCTTCTTCAGATAGAGCTTTCCTTTGAATCCAGCCTCCCCGTGTCATCTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU992 lncRNA upstream 215993 5332509 ~ 5334752 (+) False AMCG00003480
TU905 lncRNA upstream 997100 4552898 ~ 4553645 (+) True G752
TU893 lncRNA upstream 1030112 4515348 ~ 4520633 (+) True AMCG00003469
TU889 lncRNA upstream 1066475 4483890 ~ 4484270 (+) True G742
TU878 lncRNA upstream 1095603 4452564 ~ 4455142 (+) True AMCG00003473
TU1088 lncRNA downstream 1301 5557607 ~ 5558515 (+) True G908
TU1140 lncRNA downstream 273153 5829459 ~ 5829745 (+) True G960
TU1170 lncRNA downstream 399298 5955604 ~ 5955820 (+) True G983
TU1177 lncRNA downstream 429732 5986038 ~ 5986394 (+) True G990
TU1358 lncRNA downstream 1517098 7073404 ~ 7073609 (+) True G1146
AMCG00003487 mRNA upstream 43838 5463759 ~ 5506907 (+) True AMCG00003487
AMCG00003485 mRNA upstream 148205 5379028 ~ 5402540 (+) True AMCG00003485
AMCG00003481 mRNA upstream 210898 5335491 ~ 5339847 (+) True AMCG00003481
AMCG00003480 mRNA upstream 216457 5303450 ~ 5334288 (+) True AMCG00003480
AMCG00003478 mRNA upstream 363472 5175015 ~ 5187273 (+) True AMCG00003478
AMCG00003495 mRNA downstream 195837 5752143 ~ 5753261 (+) True AMCG00003495
AMCG00003498 mRNA downstream 211052 5767358 ~ 5769937 (+) True AMCG00003498
AMCG00003497 mRNA downstream 268275 5824581 ~ 5825732 (+) True AMCG00003497
AMCG00003496 mRNA downstream 358165 5914471 ~ 5915592 (+) True AMCG00003496
AMCG00003500 mRNA downstream 710595 6266901 ~ 6267507 (+) True AMCG00003500
TU1202 other downstream 931386 6487692 ~ 6494905 (+) True G1012
TU1569 other downstream 3092819 8649125 ~ 8652404 (+) True AMCG00003534
TU1763 other downstream 3699522 9255828 ~ 9263468 (+) True AMCG00003551
TU1883 other downstream 4221202 9777508 ~ 9780902 (+) True AMCG00003570
TU2334 other downstream 5933879 11490185 ~ 11491443 (+) False AMCG00003606

Expression Profile