RNA id: AMCG00005004


Basic Information

Item Value
RNA id AMCG00005004
length 3153
RNA type mRNA
GC content 0.61
exon number 15
gene id AMCG00005004
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 12183940 ~ 12199070 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACCCTCCTCAAATCACAATGCCTTGTGAAAGACTGGAGCTCGGGGTCATTCGCCGTTTGGTGTAACAGGTTTAAAGATGGTGTGCCTCTGGAGACTGGGTCAGTGATCATTCACATCGTGTTGTCTTTGGCTGATGGCTCCGCTGGGAGTGATCTGGGCTCGGCACAGCCTGTGGGGAATAGAGACCCAACTGGCTTTCATCTGAGTGGCACAGTGACAGAGCCAGCCTCCCAGTCGGAACCAGAGACCACCTACAAAGTAGCCATCAGCTTTGACCGCTGCAAAATCACTTCGGTCACATGTGGCTGTGGGAACAAGGACATTTTCTACTGCGCACATGTGGTGGCACTCTCTCTCTACCGGATCCGCAAGCCGGACCTGGTCAAACTGCGTCTTCCCATCTCAGAGACCCTTTTCCAAATGAACAGGGACCAGCTACAGAAatttgtacagtatttaatcACGGCACATCACACAGAGGTTCTTCCCACTGCACAGAAACTGGCCGATGAGATCCTGTCGTCCAATTCGGAAATCAATCAAGTCCACGggGCTCCTGATCCCACTGCAGGGGCCAGTATCGACGACGAAAACTGCTGGCACCTGGACGAGGAGCAAGTACGGGAGCAGGTGAAGCAGTTCCTGTCCCAGGGAGGGTACTATGGGTCAGGGAAGCAGCTCAACTCCATGTTTGCCAAGGTGCGTGAGATGTTAAGGATGAGGGACTCGAACGGAGCCCGGATGTTGACGTTAATAACGGAGCAGTTCATGGCAGACCCGCGCCTGTCTCTTTGGAGGCAACAGGGAACTGGCATGACTGACAAGTGCAGGCAGCTCTGGGATGAGTTGGGAGCTCTGTGGGTCTGCATCGTTCTCAACCCCCACTGCAAAAGCGAGGAGAAGACGTGCTGGCTGCGGCAGCTGAAGAAGTGGAGCGACATGGACGTGTGTCCCCTGGAGGACGGCAACTACGGCAGCGAGCTGCCGAACATCACCAACGCCCTGCCGCAGAGCAACCTCAGCCAAGACTCCCTGGCCCGGCCGAGGAGGACGGTGTTCACCCGAGCCATGGAGGCGTGTGACCTCCACTGGCAGGACAGCCACCTCCAGAGGATCATCAGCAGTGACTTCTACATGTCCCCGTCCTACCAGCGAGAGGGGGAGAGCCTGCTGTTCAACTCTCAGGGGCTGCCGCTGTGGCTCGACCATGTGCCCACGGCCTGCGCACGAGTGGACGCCCTGCGCTCCCACGGTTACCCCCGCGAAGCCCTGCGCCTGGCCGTGGCCATCATCAACACCCTACGCTTACAGCAGCAACGCCAGCTGGACATCTACAAGCACCAGAAGAAAGAGCTGCTGCAGAGAGGCGTCACGACCACCACCAATCTGGAGGGCTGGGTGGGCCATCCCCTGGACCCCATTGGCTGCCTCTTTGGGACTCTGACAGAAGCCTGTCGCCTGGATGATGACAACGCCATGGACACAGGAGATTCAGGAGAACCCAAACCCCCGGTGTACCAACACGTGCCGGTGTGGGGGTGCCAGGACACCGGGGAGTCCTACCTGGCACTGGCCCTGGAGGTGGCGCTAATGGGCATGGGGCAGCAGCGGGTGATGCCCGAGGGACTCTATGCCCAGGACAAGGTGTGCCGCAATGAGGAGCAGATCATCGTGCggctgcaggagctggacctGGACGAGCTGCTGGTTCAGACTCTCCGCAAGCAGGCCGTCCTGCTGCTCGAGGGAGGCCCATTCAGCGGCCTGGGGGAGGTGATCCATCGCGAGAGTGTCCCCATGCACACCTTCGCCAAGTACCTGTTCTCCGCCCTGCTGCCCCATGACACCGACCTGGCCTACAAACTGGCCCTGCGAGCCATGAGGCTTCCGGTGCTGGAGTCGACTGCCCCCTCGGGAGACGTGAGCCACTCGCATCACGGGATCTCCATCGTGCCGAGCCGATACCCGCGCTGGTTCACCCTGGGACACCTGGAGTCCCAGCAGTGCGAGTTGGCGTCCACCATGCTCACTGCTGCTAAAGGAGACATGTTGCGGCTGCGGACGGTACTGGAGGCCATTCAGAAAAACATCCACTCCTCCTCTCTCATCTTCAAACTGGCTCAGGATGCCTTCAAGATCGCGACGCCCGCAGACAACCCCCCGGACATCACTCTGCTCAACGTGGCGCTGGAACTGGGACTGCAGGTGATGCGCATGACGCTGTCCACTCTGAACTGGAGACGCAGGGAGATGGTGCGCTGGCTCGTCACCTGTGCCACTGAAGTCGGTCTGCGAGCTTTGGTGAGCATCCTGCAGAGCTGGTACACTCTCTTCACCCCCACGGAGGCCACCAGCATCGTGGCGGCCACCGTAATGTCCCACAACACCATTCTGCGCCTCAGCCTGGACTACCCCCAGCGCGAGGAGCTGGCCAGCTGCGCCCGGACCCTGGCGCTCCAGTGCGCAATGAAGGACCCGCAGAACTGTGCCCTGTCCGCCCTGACGCTGTGCGAGAAGGACCACATTGCCTTCGAGACGGCCTACCAGATCGTCATCGACGCCGCCTCCACGGGCATGACCTACTCCCAGCTGTTCACCATCGCCCGCTACATGGAGCACCGCGGCTACCCGCTGCGGGCCTTCAAGCTGGCCTCGCTGGCCATGACGCACCTCAACCTGGCCTACAACCAGGACACGCACCCGGCCATCAACGACGTGCTGTGGGCCTGCGCTCTGAGCCACTCGCTGGGCAAGAATGAGCTGGCCGCCATCATCCCGCTGGTGGTGAAGAGCGTGCACTGCGCAACGGTGCTGTCGGACATCCTGCGCCGCTGCACCATGACGGCGCCAGGGCTGGCAGGCATCCCGGGGCGCCGCAACTCCGGGAAGCTCATGTCCACCGACAAGGCCCCACTGAGGCAGCTGCTGGACGCCACGATCAGCGCCTACATCAACACCACCCACTCGCGCCTGACGCATATCAGCCCCCGGCACTACGGGGAGTTCATAGAGTTCCTCAGCAAGGCGCGCGAGACCTTCCTTCTGGCGCAAGACGGGCACATCCAGTTCGCCCAGTTCATTGACAACCTTAAACAGATCTACAAGGGCAAGAAAAAACTCATGATGCTGGTGCGGGAGCGCTTTGGATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU182139 lncRNA downstream 154491 12023514 ~ 12029449 (-) True G144826
TU182132 lncRNA downstream 173569 12009918 ~ 12010371 (-) True G144821
TU181947 lncRNA downstream 611530 11571190 ~ 11572410 (-) True G144672
TU181934 lncRNA downstream 677938 11505678 ~ 11506002 (-) True G144659
TU181932 lncRNA downstream 682865 11499172 ~ 11501075 (-) True G144657
TU182205 lncRNA upstream 103509 12302579 ~ 12302836 (-) True G144877
TU182206 lncRNA upstream 103895 12302965 ~ 12303263 (-) True G144878
TU182207 lncRNA upstream 104341 12303411 ~ 12303620 (-) True G144879
TU182208 lncRNA upstream 105553 12304623 ~ 12304887 (-) True G144880
TU182217 lncRNA upstream 147071 12346141 ~ 12348328 (-) True AMCG00005022
AMCG00005009 mRNA downstream 11710 12163830 ~ 12172230 (-) True AMCG00005009
AMCG00005010 mRNA downstream 23968 12156580 ~ 12159972 (-) True AMCG00005010
AMCG00005011 mRNA downstream 27573 12135378 ~ 12156367 (-) False AMCG00005011
AMCG00004987 mRNA downstream 164181 12011353 ~ 12019759 (-) True AMCG00004987
AMCG00004989 mRNA downstream 180736 12001111 ~ 12003204 (-) True AMCG00004989
AMCG00005021 mRNA upstream 85324 12284394 ~ 12288518 (-) True AMCG00005021
AMCG00005017 mRNA upstream 90840 12289910 ~ 12297782 (-) True AMCG00005017
AMCG00005020 mRNA upstream 99897 12298967 ~ 12300509 (-) True AMCG00005020
AMCG00005018 mRNA upstream 111281 12310351 ~ 12315652 (-) True AMCG00005018
AMCG00005019 mRNA upstream 141098 12340168 ~ 12344668 (-) True AMCG00005019
TU182156 other downstream 27562 12154125 ~ 12156378 (-) False AMCG00005011
TU182157 other downstream 27562 12154125 ~ 12156378 (-) True AMCG00005011
TU181238 other downstream 3277346 8872885 ~ 8906594 (-) True G144115
TU181227 other downstream 3342952 8836360 ~ 8840988 (-) False AMCG00004894
TU181155 other downstream 3806939 8353989 ~ 8377001 (-) True G144050
TU182413 other upstream 1137139 13336209 ~ 13336746 (-) True G145046
TU182803 other upstream 2765509 14964579 ~ 14967623 (-) False AMCG00005077
TU183873 other upstream 6815477 19014547 ~ 19015663 (-) False AMCG00005214
TU184064 other upstream 7370989 19570059 ~ 19573318 (-) True G146313
TU184128 other upstream 7559162 19758232 ~ 19761446 (-) True AMCG00005240

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00030990 True 6228 mRNA 0.48 14 NC_007113.7 27491066 ~ 27543942 (+)
grasscarp (Ctenopharyngodon idella) CI01000004_09429758_09474615.mRNA True 3453 mRNA 0.57 14 CI01000004 9429758 ~ 9474615 (+)