RNA id: AMCG00005017


Basic Information

Item Value
RNA id AMCG00005017
length 3666
RNA type mRNA
GC content 0.49
exon number 15
gene id AMCG00005017
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 12289910 ~ 12297782 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGCACACTTGCGGACTGCGCATGCTCACTAAGAGGCTCGTCTGCAGACTCAAAACGCGTGCAAGACCGGCGAAGTCAGACCGCATTAAAACTGCAAACTGTTATTGCACACGGACAAAACTCGTGCATTTGCGCTGCCAGTCCTCGATTATCTTTTGCATTGAATGGGAGCCCGTCCCACTCCGCGCACTGGCGCCACTCCTCCATTGCACCCCGATGACGCGGCGCACTGGCGGGAGAGGTGGCGTGCTGACGCGGGAGTCCGAGTCAACACGCTTCGGCGTGCGAAACAGTGTGCAATTGCAGCAGATGTAGAGACACGTCTGTGTTGCACACATGCAAGCGGATGCATATTTTTAGTCACAGTTGCCATCTTGCACAGACTCGTGAATTGTCTGGACTATAGCTTTATTCCAGAAATGTGTTCTGGCTGCTTCACGTTACAaagtaaaactgcatttttttatttataatgctgcacaatgtgttttaatagCATCGTGCAAAaggctattttttttattgaactaCTTGTTTTTGCAGCGTTACAGATTGCCTGCTGTTGTTCACTTGTATGTGAACACATGTGAGTGCAGTAAAGTGCGTGCAAAGCCGACTGATTAGCTTTACAAGTGTTTCAAAATTGTGCCCTTTCTGTGCAgatcatcacttttcaggatgAGCAGGCTGAGGTCAGCAGTTCAAAATGGGAACAAAGTTGTGTTGGAGAGCGATGAAAACACCAAGAGGTctcaaaagaagaaaacagccATTGCCCCAGCAGTGAAAGAAGAGCCTGCTAGTCTTTCTCTGGCCCAGAATTCCCCTTACCACTTCTTCCAAGCGCTGGATGACATCAGTTCCTTTCGCAGACAGCTGCTGGCATGGTATGACCGGAGCAAGAGGGAGCTACCGTGGAGGACAGCGGCTGTAACGGAGTCAGATGTCAACATCAGGACTTACGCAGtttggGTGTCAGAAATCATGCTGCAGCAGACCCAGGTTGCCACAGTGATTGACTACTACAATAAATGGATAAAGAGGTGGCCAACATTAGAAGATCTTGCTTCAGCTACACTGGAGGAGGTGAATGAGATGTGGGCTGGTCTTGGCTACTACTCCAGAGGCAAGAGATTGCACGAAGGAGCTCAGAAGGTGGTGAGAGAGATGGATGGTCAGATGCCCAAGACTGCAGAAGGCCTGCTGAAGCTTCTGCCAGGAGTGGGCCGCTACACTGCCGGGGCTGTGGCCTCCATCGCACTGGGCCAGgcAACAGGAGCAGTAGATGGGAATGTGATTCGGGTGTTCAGCCGTGTGCGTGCCATCGGCGCGGACAGCACCAGTCCTGCGGTCACTGAGGCTCTCTGGACTCTGGCCAACACTCTGGTGGACCCAGACCGGCCTGGCGACTTCAACCAGGCGCTGATGGAGATGGGGGCCCGAGTGTGCACCCCGAAAGGCCCGGTGTGCTCCCAGTGCCCGGTCCAGATGCATTGCAGGGCCTACAGGAAGGTGGCCGTCAGACAAGAGGAGGGTACCAAAAGACTTCTGGGAAAATCGGCTTTGAAGCCTAGCTCTGCTCCAGATATTGAGGAATGTGTCCCTGCAGGTGGCTGTGCCCTGTGCCTGCCATCCTCCCACCCCTGGGACGGCAGCCTGGGGGTGATGAACTTCCCACGGAAGCCTGTGAAGAAGCCGCCCCGCCTGCAGCGCACACTGACCTGCGTCCTGCACCGGGGGGGCCCCAGGACACAGAGGGAATACTTTCTCGTGCAAAGACCCAGCAAAGGGTTGCTGGCTGGGATGTGGGAGTTTCCAAGCATGCTCCTGGAGGAGGATTCCTCTGAGATGGAGCAGAGGGGGGCATTGCAGGCACAGGTGGAGAAGGTCCTGGCAACTCCGCTGAGCGAGAAGACTGTTCTGCACTACATTGGAGAAGTTGTGCACGTTTTCTCTCACATCCACCAGACCTACGTGGTGTACGGCTGCACTGTGCCCGGGAGGGCCGACTCGAGCCTTGCAGGAGAGGACGAGGGGGCCCTGGCAGCCCGCTGGCTCACCAACTCCGCCTTCCAGGAAGCAGCCGTGTCCACAGCAATGAAGAAGGTATTCAAGCTGTATGAGAAAACAGAAAGCACAGAGTCTCGCAGTGCCaagGATGGCAAGCGTAAAAGAAGCCCTGATGGTAAGAGTGATAAGCCACACAAATCCCAGAAGGTCAAATCTGGAAAGGAACAAAGCAGTGGGACGAAGCAGCTCTCACTCAGTAAGTTCTTTCGGCCTCCAATCAAGCGAGAGGTTGAAGATGGACTTCATTCTTGACCGAACCTGCTCTGGTCTGAAGTCCAGGATTGAAGATGGGGAGCTATTTTCCACAAAACAAGTAATGTTCCTGAATGTTTGGGAGAAAGACATCGACACCTTCCATGAGAAATTCGATTGAGCAAATCCGTCATGGAGCCAAATCACGGCTTTCCCTCTGTGTTGATTGAAACGTGTTCATGAAAGGCAACATTTCCTGACTGGTTTTTGGATACATGACAAGAACTGGCATCATCCAGTGGTTTGCAGTTTTCAATTTAAGGGGGGATTTTATTCTGCGTTCTCATAATTTATCAGTCTCTAAAATAGTTAAAGTGTTGAGCACCTTTTTAACAAAGTTAGTCAGATTTTTCAGGTCTGTAATACATTTATCTCAACAGAAGAAACAATTGCAGAAAATAATGAAGTACTCAGGACTCCATGGTTTTTACTgtgctatttatatataatgattaatGTTTTTAGATGGGCTAGTATACAATACTGTAAATGGTTTTCAAAGGTGTTGGCCTCCTGTGCAAATTCTCATCTAGAGAAGTGTTTGCTGCCGCTCCTGTGAGAGCTAGTTGTGGAGGAGGTTATAATCCTTTGACCAAATGTCCAGATCGAGCAGATGTCCACAACCACTGTCACCCCGATGTGTTACTGCATCCTGTCCTGCTGCTTCACTAAAGTCCCTCACAGCTGGGTGAAGTGTGCTGCTCCACACGGTTAAACCTCCTCTCTCGCATCACTGTTTTGATGTGCTCTACCTAACACCTTTACGAACTGAATGCAattttttattaagatgtattttacGCTTTTATAATGATGCAACATTTTACCATATAATTGTACTACAGAGCCTGCTGAGACAAGCACAGGAAAGTGGGTGTCCCCAGATAGAAAGGCTTTTTAATGACTTATTCAGGTCtttggttttgatttgtgtGAGAGTGGAGCCCCTCATTGCAAAACCCTGACATCCCTttgtcctggagagacacaggaTACAGAGAAGCTATAGTGCGGTCGTCCTCATTCCCCAGGATGAATTTTAAACGAGGTCAAGGCAGCGAGAAAGCTGTGATCTCAAGCCCCTTGCTGCTCTTATCTGGATAATAATCATGTCTGCATTTGgacaccaaaaacaaatgtactagTGACAATGGTATTTGCATTCTAAGCATTAGCTTTGATTCAATGCCCAGTGGTATTTTCTCATCTAAAAGGTGATGGTGGGGGTTggttacaaatatattgttttttagatttgtttttacaatataaatgttaataaaacatgaattgtaTGAAAGGGCTTATATCCTGTatcctttttaatttcaaaaatcAAATGCGG

Function

GO: NA

KEGG:

id description
K03575 mutY; A/G-specific adenine glycosylase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU182139 lncRNA downstream 260461 12023514 ~ 12029449 (-) True G144826
TU182132 lncRNA downstream 279539 12009918 ~ 12010371 (-) True G144821
TU181947 lncRNA downstream 717500 11571190 ~ 11572410 (-) True G144672
TU181934 lncRNA downstream 783908 11505678 ~ 11506002 (-) True G144659
TU181932 lncRNA downstream 788835 11499172 ~ 11501075 (-) True G144657
TU182205 lncRNA upstream 4797 12302579 ~ 12302836 (-) True G144877
TU182206 lncRNA upstream 5183 12302965 ~ 12303263 (-) True G144878
TU182207 lncRNA upstream 5629 12303411 ~ 12303620 (-) True G144879
TU182208 lncRNA upstream 6841 12304623 ~ 12304887 (-) True G144880
TU182217 lncRNA upstream 48359 12346141 ~ 12348328 (-) True AMCG00005022
AMCG00005021 mRNA downstream 1392 12284394 ~ 12288518 (-) True AMCG00005021
AMCG00005004 mRNA downstream 90840 12183940 ~ 12199070 (-) True AMCG00005004
AMCG00005009 mRNA downstream 117680 12163830 ~ 12172230 (-) True AMCG00005009
AMCG00005010 mRNA downstream 129938 12156580 ~ 12159972 (-) True AMCG00005010
AMCG00005011 mRNA downstream 133543 12135378 ~ 12156367 (-) False AMCG00005011
AMCG00005020 mRNA upstream 1185 12298967 ~ 12300509 (-) True AMCG00005020
AMCG00005018 mRNA upstream 12569 12310351 ~ 12315652 (-) True AMCG00005018
AMCG00005019 mRNA upstream 42386 12340168 ~ 12344668 (-) True AMCG00005019
AMCG00005022 mRNA upstream 46889 12344671 ~ 12346490 (-) False AMCG00005022
AMCG00005012 mRNA upstream 146570 12444352 ~ 12454372 (-) True AMCG00005012
TU182156 other downstream 133532 12154125 ~ 12156378 (-) False AMCG00005011
TU182157 other downstream 133532 12154125 ~ 12156378 (-) True AMCG00005011
TU181238 other downstream 3383316 8872885 ~ 8906594 (-) True G144115
TU181227 other downstream 3448922 8836360 ~ 8840988 (-) False AMCG00004894
TU181155 other downstream 3912909 8353989 ~ 8377001 (-) True G144050
TU182413 other upstream 1038427 13336209 ~ 13336746 (-) True G145046
TU182803 other upstream 2666797 14964579 ~ 14967623 (-) False AMCG00005077
TU183873 other upstream 6716765 19014547 ~ 19015663 (-) False AMCG00005214
TU184064 other upstream 7272277 19570059 ~ 19573318 (-) True G146313
TU184128 other upstream 7460450 19758232 ~ 19761446 (-) True AMCG00005240

Expression Profile