RNA id: AMCG00005041


Basic Information

Item Value
RNA id AMCG00005041
length 711
RNA type mRNA
GC content 0.54
exon number 7
gene id AMCG00005041
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 13263243 ~ 13295419 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACCTCTAGCACCCATTCCCCGCTCCCCCCTGTCTGCAAACACGGACCCGCTGGTGTCTTCACGTCAGCCCTGCGGAGACTCGTCAACAACCCCGAATTCAGCGATGTGAAGTTTGTGGTGGGGAAGGAGCGCCAGGAGGTCTTTGCTCACCGCTGCATCCTGGCCTGTCGCTGTGAGGTTTTCCATGGGATGTTCAGTCGGCAGCCTCAGACGGGTCGCCACACAGACCTGCTCGAGTCTCCTGTGGTCCTGTCTGAAGTGCAGCCTGAAGTCTTCCTGGCTGTGATCGAGTTTCTCTACACCAACTGTGTTACCTTAAACAATTACATTGCTCTTGAGGTGTTAACGTCAGCGGTTGAATATGGGCTGGATGACCTCCGAAAGCTGTGTGTGGAATTTATTACCGATACCCTGAAAGTGGAGAACGTCTGCGAAGCTATGCAGgctGCAGTGACATACGGCCAATTTGATATGAAGGAGACGTGCCTCACGTTTATAGAAAATCACACTCGGGAGATTGTAAAGACCCGTGGCTTCCATGAGCTGTCAGACCTGGCCCTGGTTCCCATCCTGCAGAGCGACTCGCTGCTGATTGACGAGCTGGAACTCCTGTGTGCTGTGCGCGAGTGGGCTCACGTCAATTCAGTACGTGTGCGTAATGAGCAGGGCGTTAAGAACCCCCCCACCTTCAGCCCCAGCCTTCGATAA

Function

GO: NA

KEGG:

id description
ko00260 Glycine, serine and threonine metabolism

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU182393 lncRNA downstream 4382 13257922 ~ 13258861 (-) True G145031
TU182307 lncRNA downstream 447725 12812977 ~ 12815518 (-) True G144954
TU182287 lncRNA downstream 482073 12780573 ~ 12781170 (-) True G144941
TU182259 lncRNA downstream 647293 12615715 ~ 12615950 (-) True G144920
TU182222 lncRNA downstream 894775 12367423 ~ 12368468 (-) True G144893
TU182539 lncRNA upstream 766302 14061721 ~ 14062111 (-) True G145129
TU182540 lncRNA upstream 766925 14062344 ~ 14062624 (-) True G145130
TU182541 lncRNA upstream 767446 14062865 ~ 14063123 (-) True G145131
TU182553 lncRNA upstream 862161 14157580 ~ 14161976 (-) True G145138
TU182562 lncRNA upstream 884685 14180104 ~ 14183513 (-) True G145146
AMCG00005040 mRNA downstream 375 13260215 ~ 13262868 (-) True AMCG00005040
AMCG00005038 mRNA downstream 45066 13183675 ~ 13218177 (-) True AMCG00005038
AMCG00005034 mRNA downstream 92896 13139180 ~ 13170347 (-) True AMCG00005034
AMCG00005025 mRNA downstream 314288 12939515 ~ 12948955 (-) True AMCG00005025
AMCG00005027 mRNA downstream 355528 12904465 ~ 12907715 (-) True AMCG00005027
AMCG00005037 mRNA upstream 5704 13301123 ~ 13306960 (-) True AMCG00005037
AMCG00005039 mRNA upstream 14125 13309544 ~ 13313577 (-) True AMCG00005039
AMCG00005036 mRNA upstream 19971 13315390 ~ 13317852 (-) True AMCG00005036
AMCG00005042 mRNA upstream 71512 13366931 ~ 13367263 (-) True AMCG00005042
AMCG00005048 mRNA upstream 96290 13391709 ~ 13429286 (-) True AMCG00005048
TU182156 other downstream 1106865 12154125 ~ 12156378 (-) False AMCG00005011
TU182157 other downstream 1106865 12154125 ~ 12156378 (-) True AMCG00005011
TU181238 other downstream 4356649 8872885 ~ 8906594 (-) True G144115
TU181227 other downstream 4422255 8836360 ~ 8840988 (-) False AMCG00004894
TU181155 other downstream 4886242 8353989 ~ 8377001 (-) True G144050
TU182413 other upstream 40790 13336209 ~ 13336746 (-) True G145046
TU182803 other upstream 1669160 14964579 ~ 14967623 (-) False AMCG00005077
TU183873 other upstream 5719128 19014547 ~ 19015663 (-) False AMCG00005214
TU184064 other upstream 6274640 19570059 ~ 19573318 (-) True G146313
TU184128 other upstream 6462813 19758232 ~ 19761446 (-) True AMCG00005240

Expression Profile