RNA id: AMCG00005081


Basic Information

Item Value
RNA id AMCG00005081
length 4207
RNA type mRNA
GC content 0.45
exon number 13
gene id AMCG00005081
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 14771562 ~ 14784842 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGGACGAGCTGAAGCCGAACTGAAGAACTTCAGCCCTCACTACAGACGCCAGTACTCTGTGGCCTTCTTCTCTCAGCTGCACGATGAGGTCGAGCAGCACAAGACAGCACAGACACAACTCCTCAAACAAAGGGAGCCTCTAGAGCCGGGGAAGCCTCTGTATGAAGAGCATATGTTGCATTATATCGATGAAATAAAGAAGTGGAAGGAGAGATTCGTGGTGGTCCGAGCCAATTACAGCATCGAGTGTCACGACAACTACGAGGCATTCGTGAAAGGAGCGCAAGCCAGATACAGGCTGTTGCCAACGGGAGGCACTGCCGTGGTGTCTTTGGACAAGTACAACGCGTTAGTGGACCGAGCCTTCCCCGACCCCAACAGTGTGAGTGAAGAGACCTCACCTCCCCTGGTCACCATGCCCGGCCCATTTCCTGTTTTCTTGCGGCTGCCTTACCGGAAGGACCACTACTTCTGTTTCACTAACGAAGAGTCCCAGAATCACTTCGTTGGCATTCTTGGGGACTGCATCCGGCACCAGAACCACGATTTTCTAAAGCATAACACGTGTGAAGTGCAGGCGTTCCTGAAGGCAGTGCAGTTTTACAGGCAGGAGAAGGGCCACTACGAGTCCTGGGACATGCTCATCGGCAGTGATGTGCGGGTGCTGAGCAACCTGGTGATGGAGGAGCTGCTGCCCACACTGCAGACGGAGATGCTGCCCAAACTCAAGGGCAAGAAGAACGAGAGGAAGAGAGTCTGGTTTGCTACGTTGGAGGCGGCCTACATCTTGGTCCAGGAGCAGGTCTCTGAGGGGCTGAACACTTTGAAGGACACATGCAAAGAGACAGCCAAGCAGTTGGAGTCCCGCATCCGCTCAGACATGGACCAGATACTCAACTCCAAGAACTTCCTGGCTGGGAAGTTGAAAGCCACCGTGTCGGAGCCGGCTGTGAAGTGCTGCACTGAAAGCGTCCAGCCCTACCTGGCCTCAATACTGGAGGAGCTCATGGGGCCCATCAGCTCGGGCTTCAGCGATGTCCGGGCCCTCTTTGAGAATGAGATTGACGCACTCAACCAGAATTTCCAGGAGCGCAACAACCCGGAGGTCCTGAAGAAGCGGGTGGAGGTCCTCCGAgagcagctgcaggagctgaGGAACCGCTTCAAATACTCCAACACCAGCCGCCTGGTCCACAGCACCCAGAACCACATGCAACAGCTGATGGAGAATGTCGCCTTCACATTGGGACACCTACTGTCCAGCACACTGAAGGACAGCTCAGGCAAGGTCCCCACTGCCATTGAAAAGGCCAAGCAGAGAGTGCTGAAGCAATATGACTATGACAGCAGCACCGTCAGGAAGAAAATCTTCCAAGAGGCTCTAATAGACATCACACTGCCCACCATCCAGAAGAGCCTGGCTCCCAGCTGTAAACCCgagCTTCAAAAGTTCGagcagtttatttttgctgATTACAGCAACTTCATCCAAGTGGAAAATGTCTACGAAGAAATACTGCTGCAGACTCTTGAGAATGAAGTTGGCAAAGTGGTGAAAGAAGCTGCCAGTGCCAAGAAGCACAACCTGTTTGTAGACAGCATGGACCTTCACTGTGTGAGCCAGTCCAGCCTGACTGAGAGCAAGACGCCACCAGGGACCACCCATGCCAGTCCAGCCAAACAGCCAGCCTCTCCTGCAGAAAAACAACCCCTTCAGCCCGAAGACTCGCAGAGTGCGTTGGTGGCGGAAAAGCAGGAAAGCGAGGCCCCGACTACACCGCAGCAGGGTGATGCCACAGCAGCCAGCACAGATACAGCGGGCACGGAGGAAGCTCTGGCAGACAACATGGCATTGCTCGGCCTCGGTTCTGCCATGGAGGAATCTCCCAACAAAGATGCACTGTTACTCACGGCCCGACAAGAGTCCGTACCTGACACAGCAGGAGAAGTGACAGAAGGGGAAAAGATTGAAggaaaagaagacaaaacagAGGAACACCCTGTCCACTTAGAGCCACAAACTCCTGCCAGCATAAACAACATTCGGGAGCTGATGGCCGAACAAGAGGACCCAGAGGAAGAGAACAAGGACTGTGAGGACAAAGAGCCCGAACAGGAATGAAGTCCAGCCGCTCGAAGGAGAGTATCAAACCAGAAGAGCAGAGCAATGCTGCCACCACAGCCAACTTGAAAGAGTTAAATGAAGATTTAGATGGCATATGCTATTGCTTATAAGTCCATGAGTGTGAGATAGATTACCTGCACTTGCATTTAGCCAGGACTGGAATGCTAGACTTGTTTGAGCTTAACTTAAACTTAAATATATTCTTTTATCATACAATTGCAAATGCGAATTGTGACGCTGATGTTTTTCCTAGAGGTGCTTACAAGAACCAGTCAAGTGTTACTGCTCCAAACCACAGCGATATCGGCCACTGGGGGGAAGAAAAGCCGTTCCCCAACATGTCTGAACgctattttaaattttaatttaactgactGAACAGATGACAAATCTATTACTGGGATTTAATAATGTTTACCTTTTAACTGTAAAAGAATTGGCCCTCGTAGACTGACACgcgctttttattttaattttggttaGGATCTTATATAAGTGCCcagtatttgtaaataatttacattttcaaagatatATATGTCTGTTTGGCAAGGCAAAggttaattgattttaaattagtaaTCATGAAGTCACTATTACTTGTGCTAACTCTACCCTGTTCAGGTGACCAAATTCAGAAATATTTagaaacaatatttgtttagaTAATTTGTATAGACTTTTATAATTGTCctcatattttaatgttctcATTTGATAGCATCTTCAAATTGTTGTTAACATTCTGTCACTCACAGACCAATTATATGGATCCAGATATCCATTATGTGATGGGCACTGTATTCAAGATAGGTCAGGCTGTTATGAAAATAGAAGCATGTTTTTCGTATTGGTTTAGTATAGGGTTTTGATCTACTTTAATGCTTCATTTTGCTAGAATACAGTAAGATTTCATTAAGATGGTTACTCAAGAATCACTATCAAAATTGATTATTCTTGAGATTAAGTTAGTGACATACTGGATAAAAAGGGAACTGGAATGTTTTTTCACCTTTAATTACTAAGAAAGCTTAGTCACTTACTTCATGTGATGTCCAACTTGACCTTCAGCCTTCGTTTGTAATCGATCTCAGCCTCAAGGGTCTGTGTCTCTGAGCAGTGTTTTCAATCTCTCCAGCAGCTCCTAATTATTCCCTTTATGTTGCAATATTTGACATGGTAGCATAAAAATACAGGACCTGCAACACAACTGCACAGATTCACAACTCTTTTGCAGACTGTTCTTACAAAGAACTCATTTAGAACCATTACACACATTGTAACATTAGATTTACTGGTTGTAAATGCTACCAAACGCCTTACCTGGACAAGCTGCAAGCCAACTTATGTGTCTCTTACTTTATGTTCAATTGTTCTGAAATTTCATCTTGGGCTGGGACCATAAATTATGCTTTTTCTGAAGCAATTCAGGTAAAACCCCAGCACTGATCACGGTAAAGCTGTGAGACATtgacaaatcaataaacatgaATTTACTAGAGGGGTCCAACCCTGGGGATAGGAAGTGGAAGACAGACAAGTTAATGTCATTGACCTTCCCTGAAACACAAAGCAGTACTGTTGTAAAAGCATTTGAACCCTTTTGTGCAACAGGCTGCGAAAAGGCCTTCTTAAAGATGAAATATAGCTCCCAGGGTATTTACTATAACAAAAggcaactaaataaataagaggaagcttcaaagcaaacaaacaattacattccTTATTATTACACTATGGTCATTTTCCTATGTTCAGTAGATTAGTAATGAGTCTTTCAATAAGGAATAACCTATGCTAACTCACATGTCTTTAAAATTACTGATTGGGATGCAATGTTAATGTGTCCATTAACATAGTGAACACTAAATTCCTTCTTCATActataaactaataaaaacaaaagaactgcAAATACAGTATAAGAAACACTGGTCAGTTTCTGTATTTACATTGCTCTGAATGAAGAAGTTATTAAAATGACCTGTAAATGCTGGTAATGCATGAATGAAGAGATTctcaattcattttaaacacatttgtaatacaGTGCCTAATAAAAAGAAGAACCATTTTCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU182594 lncRNA downstream 316479 14426966 ~ 14455083 (-) True G145173
TU182564 lncRNA downstream 567073 14204259 ~ 14204489 (-) True G145148
TU182562 lncRNA downstream 588049 14180104 ~ 14183513 (-) True G145146
TU182553 lncRNA downstream 609586 14157580 ~ 14161976 (-) True G145138
TU182541 lncRNA downstream 708439 14062865 ~ 14063123 (-) True G145131
TU182835 lncRNA upstream 283571 15068413 ~ 15069113 (-) True G145358
TU182876 lncRNA upstream 320376 15105218 ~ 15105450 (-) True G145387
TU182894 lncRNA upstream 360956 15145798 ~ 15149592 (-) True G145401
TU182930 lncRNA upstream 468671 15253513 ~ 15254888 (-) True G145434
TU182932 lncRNA upstream 471047 15255889 ~ 15257664 (-) True G145436
AMCG00005076 mRNA downstream 29632 14735839 ~ 14741930 (-) True AMCG00005076
AMCG00005074 mRNA downstream 65710 14701348 ~ 14705852 (-) True AMCG00005074
AMCG00005075 mRNA downstream 80609 14677660 ~ 14690953 (-) True AMCG00005075
AMCG00005072 mRNA downstream 137582 14625244 ~ 14633980 (-) True AMCG00005072
AMCG00005073 mRNA downstream 146547 14621180 ~ 14625015 (-) True AMCG00005073
AMCG00005083 mRNA upstream 21075 14805917 ~ 14812269 (-) True AMCG00005083
AMCG00005082 mRNA upstream 54552 14839394 ~ 14852815 (-) True AMCG00005082
AMCG00005077 mRNA upstream 179572 14964414 ~ 14969242 (-) True AMCG00005077
AMCG00005099 mRNA upstream 190409 14975251 ~ 14996206 (-) True AMCG00005099
AMCG00005098 mRNA upstream 258190 15043032 ~ 15056977 (-) True AMCG00005098
TU182413 other downstream 1434816 13336209 ~ 13336746 (-) True G145046
TU182156 other downstream 2615184 12154125 ~ 12156378 (-) False AMCG00005011
TU182157 other downstream 2615184 12154125 ~ 12156378 (-) True AMCG00005011
TU181238 other downstream 5864968 8872885 ~ 8906594 (-) True G144115
TU181227 other downstream 5930574 8836360 ~ 8840988 (-) False AMCG00004894
TU182803 other upstream 179737 14964579 ~ 14967623 (-) False AMCG00005077
TU183873 other upstream 4229705 19014547 ~ 19015663 (-) False AMCG00005214
TU184064 other upstream 4785217 19570059 ~ 19573318 (-) True G146313
TU184128 other upstream 4973390 19758232 ~ 19761446 (-) True AMCG00005240
TU184245 other upstream 5235868 20020710 ~ 20023507 (-) False AMCG00005256

Expression Profile