RNA id: AMCG00005113


Basic Information

Item Value
RNA id AMCG00005113
length 705
RNA type mRNA
GC content 0.52
exon number 5
gene id AMCG00005113
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 15954464 ~ 15956072 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCACCAGGCCGCTTCCCCAGCAGAGCCAACCGGCAGCTCTCCTGGCCCGGCCCACCAGGAACGGGCTTATGACTTTGTGGAGTGCCCAATGAGGGCCTCAGCTGgaggaaacaaaacaccagaTGACATTGACCCCACAAACATGATGCCTCCTCCAAATCAGATTCCTGCTCCTGACCAGCCCTTCCCTCTGTCTGTGACCAGAGAGGAGTCCAAGATCCCCAGAGCCGGCACAGATAAGAACTGGGTTTATCCTTCTGAGCAGATGTTTTGGAATGCAATGCTGAAAAAGGGGTGGCGCTGGAAGGATGACGACCTCGCTCCTGACGATATGACAAACATCATCAGAATTCACAACCAAAATAACGAGCAGGCGTGGTACGAAATCTTAAAATGGGAAGCTCTTCATGCAAAGGAATGTCCCTGTGGCCCTGCTCTTGTCCGGTTTGGGGGGAAAGCCAAGGAATTCTCGCCAAGAGCCAGGATACGCTCCATGATGGGATACGAGCTGCCTTTCGACAGACACGATTGGATTATTAACCGCTGTGGAAAGGAAGTGAGATATGTAATTGATTACTACGACGGAGGAGAAGTTAACAAGGAAAATTACCAATTCACAATCCTCGACGTTCGCCCAGCCTTCGACTCCCTGGGCGCCGTGTGGGATCGGATGAAAGTGACTTGGTGGCGCTGGTCATCCTAG

Function

GO: NA

KEGG:

id description
K01764 HCCS; cytochrome c heme-lyase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU183044 lncRNA downstream 419319 15503271 ~ 15535145 (-) False AMCG00005111
TU183041 lncRNA downstream 434301 15503271 ~ 15520163 (-) False AMCG00005111
TU182938 lncRNA downstream 687516 15261347 ~ 15266948 (-) True G145441
TU182932 lncRNA downstream 696800 15255889 ~ 15257664 (-) True G145436
TU182930 lncRNA downstream 699576 15253513 ~ 15254888 (-) True G145434
TU183125 lncRNA upstream 2779 15958851 ~ 15978855 (-) True AMCG00005114
TU183239 lncRNA upstream 418590 16374662 ~ 16375417 (-) True G145680
TU183346 lncRNA upstream 1008131 16964203 ~ 16965074 (-) True G145760
TU183496 lncRNA upstream 1587091 17543163 ~ 17546332 (-) True AMCG00005158
TU183641 lncRNA upstream 2068693 18024765 ~ 18025674 (-) True G145995
AMCG00005115 mRNA downstream 2173 15947528 ~ 15952291 (-) True AMCG00005115
AMCG00005112 mRNA downstream 140405 15792614 ~ 15814059 (-) True AMCG00005112
AMCG00005111 mRNA downstream 436812 15503082 ~ 15517652 (-) True AMCG00005111
AMCG00005101 mRNA downstream 517494 15418575 ~ 15436970 (-) True AMCG00005101
AMCG00005107 mRNA downstream 584476 15359973 ~ 15369988 (-) True AMCG00005107
AMCG00005114 mRNA upstream 2632 15958704 ~ 15975921 (-) False AMCG00005114
AMCG00005123 mRNA upstream 87129 16043201 ~ 16045747 (-) True AMCG00005123
AMCG00005124 mRNA upstream 90407 16046479 ~ 16057475 (-) True AMCG00005124
AMCG00005133 mRNA upstream 182396 16138468 ~ 16166800 (-) True AMCG00005133
AMCG00005125 mRNA upstream 235097 16191169 ~ 16205201 (-) True AMCG00005125
TU182803 other downstream 986841 14964579 ~ 14967623 (-) False AMCG00005077
TU182413 other downstream 2617718 13336209 ~ 13336746 (-) True G145046
TU182156 other downstream 3798086 12154125 ~ 12156378 (-) False AMCG00005011
TU182157 other downstream 3798086 12154125 ~ 12156378 (-) True AMCG00005011
TU181238 other downstream 7047870 8872885 ~ 8906594 (-) True G144115
TU183873 other upstream 3058475 19014547 ~ 19015663 (-) False AMCG00005214
TU184064 other upstream 3613987 19570059 ~ 19573318 (-) True G146313
TU184128 other upstream 3802160 19758232 ~ 19761446 (-) True AMCG00005240
TU184245 other upstream 4064638 20020710 ~ 20023507 (-) False AMCG00005256
TU184246 other upstream 4064638 20020710 ~ 20023507 (-) False AMCG00005256

Expression Profile