RNA id: AMCG00005115


Basic Information

Item Value
RNA id AMCG00005115
length 774
RNA type mRNA
GC content 0.45
exon number 4
gene id AMCG00005115
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 15947528 ~ 15952291 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCCGAAACTGCATTGGAAGAAATGGCAGTGTTATCCGCAATATACTGCGAAAAAGATGAATTTGAGTTGCTGGAGCAGTCGGATGCAAAGGGACTTGTATTCCAGATCCAGCTTGTAGTGGAGACACACTTGCTGAAGCTGGTCTTCCAGTTACCCCCCGAATATCCATCCTGCTCTCCTGATATCTCCGTTAGCTCTGAGCAGCTCACCAGAAAACAGTGCTCAGATATAAGGCTGAGTTTACTTAATAGAGCCTCAATTCTTATATCGCAGCCCATGGTTCACGAACTGTTACTCTGGCTGCAGCAGAATTGTACAATCGCCACTAGTGAGCAATCGGTGAGATACTGCAGCCCTGGAGGGACCTGTGAGCAGAGATGCAAAGAGGAGACCTGGACAGCTCTGTTACTGATTGATCACATGAGAGCgagaaataaatatcaaaaaacaattgaaaaatggACTTTGGAATTAGGTCTCACTGGCAGACTCTTCATGGGGAAGTTGATATTGATTCTTCTGCAGGGAGCAAAGGAAACCATTAAGGAGTACCTTCTTCTGCAGAAGACTGTAAAAGTGGATGTTGATTCAACtggaaagaaatgtaaagagAGAATGATGCGTGTCCTTTGTGAAACCCCCCTGCCCCTGGGATGCAAACAGCTTCCAGCATTTGAAGTCAAAGATTATTCATCTCTGGAGGAACTGAGAAGCGAATTTGAATTAGTTGGACTATTCGAGCTGTACCACGAGTTTGTGCACACGCTGCTT

Function

GO:

id name namespace
GO:0044424 obsolete intracellular part cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU183044 lncRNA downstream 412383 15503271 ~ 15535145 (-) False AMCG00005111
TU183041 lncRNA downstream 427365 15503271 ~ 15520163 (-) False AMCG00005111
TU182938 lncRNA downstream 680580 15261347 ~ 15266948 (-) True G145441
TU182932 lncRNA downstream 689864 15255889 ~ 15257664 (-) True G145436
TU182930 lncRNA downstream 692640 15253513 ~ 15254888 (-) True G145434
TU183125 lncRNA upstream 6560 15958851 ~ 15978855 (-) True AMCG00005114
TU183239 lncRNA upstream 422371 16374662 ~ 16375417 (-) True G145680
TU183346 lncRNA upstream 1011912 16964203 ~ 16965074 (-) True G145760
TU183496 lncRNA upstream 1590872 17543163 ~ 17546332 (-) True AMCG00005158
TU183641 lncRNA upstream 2072474 18024765 ~ 18025674 (-) True G145995
AMCG00005112 mRNA downstream 133469 15792614 ~ 15814059 (-) True AMCG00005112
AMCG00005111 mRNA downstream 429876 15503082 ~ 15517652 (-) True AMCG00005111
AMCG00005101 mRNA downstream 510558 15418575 ~ 15436970 (-) True AMCG00005101
AMCG00005107 mRNA downstream 577540 15359973 ~ 15369988 (-) True AMCG00005107
AMCG00005106 mRNA downstream 596062 15348635 ~ 15351466 (-) True AMCG00005106
AMCG00005113 mRNA upstream 2173 15954464 ~ 15956072 (-) True AMCG00005113
AMCG00005114 mRNA upstream 6413 15958704 ~ 15975921 (-) False AMCG00005114
AMCG00005123 mRNA upstream 90910 16043201 ~ 16045747 (-) True AMCG00005123
AMCG00005124 mRNA upstream 94188 16046479 ~ 16057475 (-) True AMCG00005124
AMCG00005133 mRNA upstream 186177 16138468 ~ 16166800 (-) True AMCG00005133
TU182803 other downstream 979905 14964579 ~ 14967623 (-) False AMCG00005077
TU182413 other downstream 2610782 13336209 ~ 13336746 (-) True G145046
TU182156 other downstream 3791150 12154125 ~ 12156378 (-) False AMCG00005011
TU182157 other downstream 3791150 12154125 ~ 12156378 (-) True AMCG00005011
TU181238 other downstream 7040934 8872885 ~ 8906594 (-) True G144115
TU183873 other upstream 3062256 19014547 ~ 19015663 (-) False AMCG00005214
TU184064 other upstream 3617768 19570059 ~ 19573318 (-) True G146313
TU184128 other upstream 3805941 19758232 ~ 19761446 (-) True AMCG00005240
TU184245 other upstream 4068419 20020710 ~ 20023507 (-) False AMCG00005256
TU184246 other upstream 4068419 20020710 ~ 20023507 (-) False AMCG00005256

Expression Profile