RNA id: AMCG00005156


Basic Information

Item Value
RNA id AMCG00005156
length 3467
RNA type mRNA
GC content 0.43
exon number 31
gene id AMCG00005156
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 17401569 ~ 17433655 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAAGAAGCAAGTGGTTAGGGTTTGGGTAACACATAGAGGAAACTGCACGGACTGATAAGCAGGCAAGAAAACGACGTATGGTGTTTCTGAAGGGCTTTCCAAATCTCTGGAAATGACAAGTCATATTGGACTAAAGCTCCTGGCAATATGTGCTGGGTTGCTGTTCTCCGTCATCTCATGTCAAGgttttacttCCACAGCAACCACCCAGACAACCAAACTCCCACTCACCACTACACCTATCTCTgcaataaattattcaaaatctACAGCATCATCCCCCACAGTCAAACCTGCACCCACCACTTCATCTAACTCTGCACAGCCTAATTTGAATTTTACAGcatcaACTACTTTACCCCCATGTGATCCCTTTCAAGGTGTGGTTCTTAGGCTGTatgacaaaaatggaaaaatttctgaaaacaataTCACGGacagattaaaaacatatgttacaaaaggaaaaggaaagttaTGTCTGTGCCATGCAGATAACAACAGTTCACACAACTTAACAGAATTAAATTGTAATGGTACAAAAGCACCAAGTACTTTTGAAGATAATTGCTCTTGCATATCTGAATGGAATGTGGAAGAATGCAGAAATTATGTTTGTAACATTTCTACAATAAAATGCAACGGCCATCAGATATTTGTGCATGTCAATCCAGatctTACAGAGCTTAAATTTGATCAGATTTCCACAGCTACTTCAATCACTTTTTTGAAGGCAGGTGTAGATGATATATGTAAAgatatgaaaattaaatacagctgTAATGAAGAAGgaaacaacacaacaatacCTTGTGATACATTGAATAATTCAGTCTCATCTTGCAAACTTTCGAACCTGGACTATTTCACTCGTTATGAGTGTAATGCAGAAGCAACTTACTTCAATGAAACTCAAAATTTTACATTGAAAGGAAACACCACCTGTGGAGagGTTAACATAACAGTCAAACCAAAGGATTGCAAGAATGACAGCATTGAACTTGAATGGCAAAGACATGTGAGAAATGAGTGTGCAAAAGTACCCTTtgactatacatttatttGTAAtaacacagaagacaaatcCAAATCTGTTAACATAGCAGGACATATTCCAGAAAAAGGTGTCATAATGATGTCGACCctttcagcatttaaaaattaCTCTTGTTATGTGACTGCCTTCTACAAAAAagtgaatataaataattcGATAACTACGGCACAAACTAAAGCAGGGGAGCCCGATAAAGTAAAAGGTCTGACTACAAAAGTAGAGTCCCAAAACACGGTTATTATAGACTGCACAAAACTGTCTCAATCGGCGTGGAGGGGCCCATACATTACCTATCATGCAACAGCAGTATTGTATGATCAGAAGCAGACTATGACATCAAATGattgtaaatttaaattcaagGATCTCAAGTATTTGACAACTTATACTTTTAAGGTTACAGCTAAAAATGGTTTCTATGAAAGTAAGATTGAATCAAAGGATGAAACAACTGGATATAATGACAAAGCTCTCATTGGGTTCTTGGCATTTCTCATTGTTGTTACATCTGTGGcccttctttttgttttgtataaaatatacatacttCAGAAGAAAAAATCAGACAATAATGAAGAAAACGTAGAACTTATCAGGAATGAGCATTCCAAGGGTTTTCAGTAAATTCACTGTCAAAGAAGCCAGGAAATCGTGCAACCAGCAGAAGAACCGCTATGTCGATATCCTGCCCTGTCCAAAGGAAGAGACAGTCCATGACTTCTGGAGAATGATCTGGGAGCAGAAATCCTCTATTATCGTGATGGTGACCCGCTGTGAGGAAGGAAATCGGAACAAGTGTGCTCAGTATTGGCCAACAATGGACAGGGAAGCGGAAATCTTTGAAGAATTTGTTGTGAAAATCAATGATGAAAACCAGTGCCCGCATTACATTATCCGAAACCTCAGAGTTTCTAATAGAAGGGAGAAGTCCTCAGAGAGGGATGTGACTCACATACAGTTCACCAGCTGGCCCGACCATGGAGTCCCCGGCGACCCGCACCTCCTGCTGAAGCTGCGCAGTCGAGTCAACGCTGCTGGGGTTGGCCGGACTGGCACGTATATAGGCATCGACGCCATGATGGAGTGCCTAGAGGCAGAGGGCCGAGTGGATATTTATGGCTACGTGGTTAAGCTCCGGCGTCAGCGGTGCCTCATGGTGCAAGTGGAGgCCCAGTATATACTGATCCACCAGGCCCTGATCGAACATAATCAGTTTGGAGACACggagatctctctctctgagctgcACTCCACTCTCAATACCTTGAAGAAAAAGGACCCTCCATCGGACCCGACACTGCTAGAGGCAGAATTTCAGAGGCTTCCAAAGTACAAAAACTGGAGAACACAAAACATGGGAACAAATGAggagaacaagaagaaaaatcGATACTCCACTTTTATACCATACGATTACAACAGAGTGCTCATCAGGCTGGAGGATGAGGCGAGTCACGACAGTGAGCACGAAGAGGATACCGAGGACTCGTCTGATGATGACGACGAGGACTCAACCAAATACATCAATGCTTCTTACATAGAGGGCTACTGGGGCCAGAGATGTCTGATTGCTGCCCAGGGGCCTCTTTCAGATACCATCGCAGACTTCTGGCAGATGATCTTtcagaagaaagtcaagttcattGTGATGCTTACAGCATGCAAGGAGGGAGACCAGgagTTTTGTTCACAGTACTGGCATGATGAAAAGACGTTATATGACGAAATTGAAGTCACAGTGGTGGATACCGAAGTCTGTCTGGGATACATTGTCCGAGGCATTGAAATAAAGCACACCAAGAGGAAAGAGAGCCGCAAGATCTACCAGTATCATTTCCAGAAGTGGAGTGAGAGCAGCCTGCCTGAGGATTCCCAGGATTTGATAGCAATGATCAGAGCCATCAAGAAGAAGTTTAAACGGGACATCTCCAGGCCTGAGAGGAATATGCCGGTTGTGGTTCATTGCAATGACGGAACTACACGGACAGGGATGTTTTGTGCCCTGTGGAATATCCTCGACAGCGCAGACACAGAAAAGCTGGTTAACATCTTCCAGATGGTAAAAACTCTGCGCAAGGAACGGCAAGGAGTGTTGTCAAGCTTTAACGGGGAGGTGACATCAAACTCCGCCAGAGAAGTGGACTCAGTGGAGATTGTCAGTGAAGACAAAGAGGCCAGAAAGCAGCAGGAGAAGACAGAGAACAGCACGGCCTGCCAAAATGCACAGGAGCCTCCCAGCGCCGCTGCTCAGACCCCTGACGCTGACAGTAAAGCTGCAGAAACTAATGCCACCAGCACAGCAGACAAGAAAGAGTCATTGGAAACGGCCAAGGAATCGACGGGCTCGCCTGAGAAGACTACAGAAGAAAGTGCTTCTAATGGTCCAACTCCCACTGTTGAAAGCCAGTGA

Function

GO:

id name namespace
GO:0006470 protein dephosphorylation biological_process
GO:0004721 phosphoprotein phosphatase activity molecular_function

KEGG:

id description
K06478 PTPRC, CD45; receptor-type tyrosine-protein phosphatase C

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU183346 lncRNA downstream 436495 16964203 ~ 16965074 (-) True G145760
TU183239 lncRNA downstream 1026152 16374662 ~ 16375417 (-) True G145680
TU183125 lncRNA downstream 1422714 15958851 ~ 15978855 (-) True AMCG00005114
TU183044 lncRNA downstream 1866424 15503271 ~ 15535145 (-) False AMCG00005111
TU183041 lncRNA downstream 1881406 15503271 ~ 15520163 (-) False AMCG00005111
TU183496 lncRNA upstream 109508 17543163 ~ 17546332 (-) True AMCG00005158
TU183641 lncRNA upstream 591110 18024765 ~ 18025674 (-) True G145995
TU183674 lncRNA upstream 864192 18297847 ~ 18298103 (-) True G146022
TU183675 lncRNA upstream 918212 18351867 ~ 18352132 (-) True G146023
TU183766 lncRNA upstream 1308229 18741884 ~ 18753533 (-) False AMCG00005207
AMCG00005153 mRNA downstream 123015 17261914 ~ 17278554 (-) True AMCG00005153
AMCG00005154 mRNA downstream 159850 17224757 ~ 17241719 (-) True AMCG00005154
AMCG00005162 mRNA downstream 292264 17101527 ~ 17109305 (-) True AMCG00005162
AMCG00005163 mRNA downstream 313895 17064599 ~ 17087674 (-) True AMCG00005163
AMCG00005164 mRNA downstream 339012 17048045 ~ 17062557 (-) True AMCG00005164
AMCG00005159 mRNA upstream 40867 17474522 ~ 17491386 (-) True AMCG00005159
AMCG00005157 mRNA upstream 88958 17522613 ~ 17530487 (-) True AMCG00005157
AMCG00005158 mRNA upstream 109491 17543146 ~ 17546150 (-) False AMCG00005158
AMCG00005168 mRNA upstream 203041 17636696 ~ 17666606 (-) True AMCG00005168
AMCG00005176 mRNA upstream 260528 17694183 ~ 17699719 (-) True AMCG00005176
TU182803 other downstream 2433946 14964579 ~ 14967623 (-) False AMCG00005077
TU182413 other downstream 4064823 13336209 ~ 13336746 (-) True G145046
TU182156 other downstream 5245191 12154125 ~ 12156378 (-) False AMCG00005011
TU182157 other downstream 5245191 12154125 ~ 12156378 (-) True AMCG00005011
TU181238 other downstream 8494975 8872885 ~ 8906594 (-) True G144115
TU183873 other upstream 1580892 19014547 ~ 19015663 (-) False AMCG00005214
TU184064 other upstream 2136404 19570059 ~ 19573318 (-) True G146313
TU184128 other upstream 2324577 19758232 ~ 19761446 (-) True AMCG00005240
TU184245 other upstream 2587055 20020710 ~ 20023507 (-) False AMCG00005256
TU184246 other upstream 2587055 20020710 ~ 20023507 (-) False AMCG00005256

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00041516 False 3393 mRNA 0.42 27 NC_007133.7 22977813 ~ 23006842 (-)