RNA id: AMCG00005168


Basic Information

Item Value
RNA id AMCG00005168
length 8957
RNA type mRNA
GC content 0.47
exon number 14
gene id AMCG00005168
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 17636696 ~ 17666606 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCGGGACAACCGGACTACAAACAGCAGAGCAGGTGGCCTTTCTTCGGAGGCCTTTTCCAGCTGCCTGTCTGATCCATGCCAGAACGATGCCACGTGTGAAGAAAAATCCACTGACTATATCTGCTATTGTCCGTCCGTATTGGTCAGCCCTTTGGAACAGAGCTGTGAAAACTCCAGCCACCTCTGTCACGTAAGCGGCTGCCAAATCGACACCAAGTGCATGAACACTGCGGAGAACTCCAGCCACCTCGTCTGTCAATGTCCGCCCAGCTTTCCCGGAGAACTGTGTGCAGCTTACATACAGCAATGTGCCAACAGCCTTTGTGAGAATGAGACGCACTGCCAGCACAGAGCTGCTCCGGAGGACGTTGCCGATTACAGATGCATCTGCAGGGAAGGTTTCAGAGGCGCGCACTGTGAGGTCGACGTGAACGAATGTGCCTCAAACCCCTGCCAGAACAGAGCCGTGTGCAGGGACAGGATCGACGGCTACTCCTGCTACTGCGTGCCAGGTTTCCAGGGCAAGCACTGCGAGATCGAAGTGAACGAATGCGCTTCTCAGCCCTGCCAGAATGGAGCAACCTGTCTGAATAAAATCGGGAAGTACGTCTGCCTGTGCGTGCCAGGTTACACAGGGACCAGCTGTGAGCTGCAAATTGATGAATGTCAATCGGAGCCGTGCTTCAACGGTGCCAGCTGTCGTGACTACCTGAACGGTTACTCCTGCACGTGTGCTCCAGGTTTCGAGGGAGACCTGTGTGAAGTCAACACAGACGAGTGCCGGAGTCAGCCGTGCCACAATGGAGCGCGCTGTGTCGATGCTGTCAATGGCTGTGATTGTTCCACATCTGGCTTCATGGGCCGACACTGTGAGACTCCCGTCCCACCCTGCATGTGCCAGCCCTGTCTGCACAACGGCACGTGTGAAGAGCGCAATGGAAGCTACACGTGCAGCTGCTGGCCAGGATTCCTGGGGAAGGACTGTGAGGAGGACATAGACGAATGCAGCAGCAACCCCTGTCAGGCTGGGCAGTGTTTGGAGCTGTCCCGGCAAGAACTGTACGGGACCATCCCTGAACTTCCTGTGTGGTTCGACTACCAGCGAGCTTCTGGATTCGTCTGCCGATGCCCACAAGGATTTAAAGGCATTCTGTGTCAAGACGATGTCAACGAATGTGATGCGAGTCCCTGTCAAAATGGCGGCATTTGTGAAAACACTGATGGGGGTTACATTTGCCACTGTTTACAAAAAAGCACAGGGGGATTTCTGTACGGGGGGCAGAACTGCTCGGAGGCCCTCGTGGGCTGCGAAAATCACAACTGCGAAAACGGAGGCACGTGCGCTCCCTTGCTCCGAAACGGTCGGCATGAATACAGCTGTCTGTGTCCAAACGGTTACGCGGGCTCGAGGTGTCGGATGTCCACCACCTTCTCCTTCGAGGTGAGCGGATACTTCCACACCGAGACGCCCCTCAAGACGGAGGACACGCTCTTGAACGTCACCCTGAGTTTCAGAACGGTGCTGCCAAACGCCGTTCTGTTTCACCGGGGGAATGAAGACATCGTCCTCAAGCTGGAGCTGGTCTCGGGCCACTTGCTCTTGACGCTGCAGAAGACCAACGAGCTGAGTTCTGCTCTGGAGCTGCCTCACAACGTCACCGACGGGGCGTGGCATGCCGTGGAGACCACCCTGGGAAGGAGGACGTTTGGGATCGCCCTCCTGGATGACTCCTGTCTCAGCGAGTGCCAGGCGAAGGTTGCCCTTGCGATTCTGAACGGCCAGCTCGAATATGCATTCCTCGACGTCTTCATCGGGGGGCTCAGAGAGGAGGGGAATTGGTCTGAGAGCACCGACGCCTTCCACACCCAACCGTACTTCATCGGCTGTCTGCGAGACGTGTACGTAGATTCCCAGCTGATCATCCCGGCCAACTGGTCCAGTGTGTCAGGTGTGAATGTCAGTCCGGGATGCAGTAACGAGGACCGCTGTGTGGCCGGTCCCTGCCAGAACCGAGGCCGCTGCGTCAACCTGTGGCAGAGCTACTACTGCGAGTGCCACAGGCCTTATGAAGGACAAAACTGCTCAGATGaatatgttacAGCCAGATTTGGAAAAGACAACTCAGAGGGATATGCTCTCTTCACGGTCGACGACAGTCCCGGACAGAACGTCACCGTTTCGATGTTTGTTCGAACCCGCAGACGAACCGGACTGCTTCTGCTTTTGACAAACCGCACGGGACACTACCTCAGGGTCTGGTTGGAAGATGGAAAAGTCCAAGTGCAGGTCCATCGCTTGGAGATCCTCTCGGGAGATCGCTTCGTTAGCGACGGCCACTTCCATCTACTGAGTGTGGAGATACGGCCAGGACACATGGCGCTGTATCAGTCCGCCCAGAGGCTGAACCACACCTCCATCCGCACCGTAAGGGTCCAGACGGGGGATGTTGCCTATGTCGGTGGCTTGTCAGATAGAATGACGGCCGTCTCTCTCGGGGGTTATTTCAAAGGCTGCATTCAGGACTTAAGGATCAACACCAAACGACTGGAGTTCTACCCCATCGGCACCCCTGTGATGTCATACAGCCGAAGAAGCCTTGTGAACGTGACGCGCGGCTGTGCTGGAGACGACAGCTGCAGTGACAACCCGTGCCAGAATGGGGGGGTGTGCTACTCCATGTGGGACGACTTCACGTGCACCTGCCCCACCAGCACGGCGGGGAGGACGTGCGAGCAGGTCCAGTGGTGTGAACTCGCCCCCTGCCCGGCCGCCGCCGTCTGCCAGCCCCGCCCGAGAGGGTTCGACGGCGTTCTGCACTACGAGGGCAATGGGAAAATTTCCGGCGATCTCGTCAACATCACCTTCAGCTTCCGGACAAGAAATCGCGAAGCCGGTGTGCTCCATTCGGGAAAGGGCCCCGAATTCGTTACCGTCTCCATCCACGACTCACACTTGCTCTTTGAGTTACGGAGCGGCAACAGTTTCCTCACATCCAGAATTAGGAGCCAAACACCAGTGAGTGATGGCAGGTGGCATAAAGTGATGCTTTCTATGATGACCCCCACGTCTCAGCTGTCGAAATGGGTCATGGTGGTAGACAACGAGGAACAGCTAACGACCACGAATGTTGTAACTGGGAATTTGAACTTCCTCAGGGAGGGAACGGATATTCTTCTGGGGGGTTTGGGCCCCGGCAACTTTACCGGGTGCTTAAGCACAGTGGAGATCGGTGGCATTTCATTGCCACACTTTGGAAACTCCGAGACGCACCTCCCGAGATATCAAGAGGAGCAGTTCATTAAAACGTCCGCGGAGCCGGCTCTAATTGGCTGTGCGGGAGCGGACGTCTGCGCGGTCGAGCCTTGCCTGAACGGAGGCCGCTGCGAGGATCTTTTCAATCTCTTTAATTGCACATGTTCCCCCGGCTGGACTGGTCCGAGGtgtgaaattaatattgatAACTGCGCATCCAACCCCTGTATCCATGGAAATTGCTCCCATAAGACTTCATCTTACGAGTGTGACTGTCACCCCGGCTACACCGGGAGAAGCTGCGAACTGGAGATAGACGAATGTGCAAATCACAAGTGTGGGAGAGGAGCCACCTGCCTGGATGGCATCAACAGATATTCCTGTCTGTGTCCTGAGAACATGACAGGCCCCCGTGTGGATATTGAAAAGTTTTCCTGGTATCTTCCCAAATTTCGATTCCCAAAGCTACCAAAGACGGTCTGTGTCGACGACAAGAAGAACTTCACCTGCTTCAATGGAGGAAACTGCTCCGAATCTGGCGCGGGCAGGATGTGCCGTTGCTTGCCAGGGTTTTCCGGTGACTGGTGTGAAATGGACATCGACGAGTGCCGCTCCGACCCCTGCCTGAACGGGGGCTTCTGCCGCAACATGCTGAACAAGTACCAGTGCATCTGCGACGTGAGCTTCGCCGGGGAGCACTGCGAGGTGGACACTTACACCTCTCAGCACTTAGCAGCTGTTCTTGCTCCCTGTCTCGTTGGAGGTGCCATTACCATAGGAATCGTGTTAGCCTTTATGATTATCAAAATCCGGGAGAAGCGGCAGATGGAGGGATCGTTCAACCCCAGAAGCCTGGAGAGCAGCGCTCCTCCGGCGATCTCGGGGAGCAGCGCCATGAAGCTGCCTCCCTTGACGGCAGACAGCCTGACCTCTGAGCTCCTGCTCTCCGTGTGCTTGGTGTCGGTGGCCCTGCTCCTCGCCCTGTTCCTGGCCGCCATGGCGTTTATCGTGGCGATGAACAAGAGGGCCACCCACGGGACGTACAGCCCCAGCCGGCAGGAGAAGGAGGGATCCCGGGTGGAGATGTGGAACATGGTTCAGCCTCCTCCCATGGAAAGGCTGATATGAGCCTCTGAACCCACGTGCCCCTGTGAGATGCCAAGGTGGGTTGAGTGCACTCGTCTTCAGCTGGGATTCACAGCCCGATCCAGAACTGAAACCCATGGGCGCTCGTCTCTGCACTGACTGTATCTGTCAATGACTTATTCACCTACTACCTGGGAGAGCACGGGATAAGTTTTTTAAAGAGCGTCTTTGCAAGGTCCTGGAAACCTCGATATCATCACACTCCTGCATCTTGGAGTTTCAGTTTTACAGTTCACAAATAATTACACTACAAGGCTTCAATCTCTCTCAATCTGTGTTTACAACGACTTTTCTCATGTGCTTGATTTGGAATGGGGTTGATTTGCCTCCCAGCCCAAACCTACAAGCACAGAGCACGAGAAAAGACGTTGAATACAGAGCAAAGCAGACATGTATATATCCTGAACCAATCTTCTGGGGTGTAAACACTGTACACTCTGCTTTCCAAAGGTAAAATTAACTTCTTTTGGTCTTTGTCTTGTGCACAATATTGTTGGTTTATGTTGTTAAAATTGTACTTTAAAAGTTCCCTTTTATTCTACTTGTCTAGCAAGGGGGAACTGAGTCAGGCTAGTGTTTATATCAAcgtactttaatttattttgtgttgcgTTTAAAGTTTGTTATGCAATCGATGTGAAATGTGGTGACATGTTAGCAACGAGGTTATagaaccattttatttttgttgtgcaAGATTAGCAATAATGTTTGTGGTACACAACTCTAAACCAGTGCTTTGTAAGAGTCCTAGCAGATACATTTGATGTCCAATATAGATGCGATGAATGAAGCGGTTATGAAGATCCTTTTAAAAGGTAATTTGGTCACCTTTGACAGATCTGGGACTTGGTTgatcaaataatattaaaataatagaaaaacaaaaaaatctcctttttaatatactttataaatgCTGGTTTCACAATGAAAACCTTTCTGCTCTGGAGTGAGAATTGAAACATTTATGGGTCATGATATGATTTTGCATTTACCTCAATGCTACAGGCAGCTACTGTGTTTTCTTCACCGTAaaggatttttttctgtttaacgAATGAAACTATATACCATAATTGTGCGTAATTGTACGTGACAACTGCTGAGCTATGCCAGTTTTGTAATCCTCCATCGTCAGATAATTGTCCTCCCAGTCATCTGAATTAAAACATGCAACTGTCTGTTTAAACTAGCCGAATAATTATGACTTGCGATTGACTGGAAACAAACTCCATGTGCCAACTTTTCAACCTTATTTCACAGGATTTCCTGTGAACccaaaactaataaaataagttaattgaatacgtatattaaaatatgatggCAAAGCACATCCACGTTCTCTGGCAGAGCCCTGTATATCTGCTATGATGGCACCAGACATGCTTAGTACAGCAGCTTATAGTGAGTCAGTTCACCATGTGCCCATTGGGAGACTAAACTGTGCCCTGCCATTACATGAGTCAGATTCAAGATAGCAGCTCACTTTAATTCCAGTGGCAGTAACAGACAATCAAATGTAGGGAAGATAAaacttgtttattaaaaaacatgttgagCAAAATGAACATCCTTTTCGGTCTGTTAACGCAGGGAACGGTGTGCTTGGCTCCCACCATTATTACTGACTTGTAATGTTTTTCGTTTTGAAGAGGAGAACTCATGCCCAAGAGGCTGGTGTGATGCAGCCCAGCACGTGGTCTGAAGTAGTGGGTTTATATTGGCAGGGGGGCAGGTCATCTGGTATCAGTGGACCCAGTTCAGCTGAGCTGCAAGTCTGTAGTGGAAGCTTAGCATTTCCTACAGGACCAATGTCTACACAGTATATATCAAAGATGTGCCTAGAAGAGTCTTAACGTCTCCAAATGAAAGTGCTTTGCTCTTCTCATGCTCTTGCATAAAATCCCCACGTATTCTTCGCCTTCTACACTAGAGTAAATACGACTGAATGAAATTCTGTAAAGGAACTCCTAAGCTGCTAATTTCACCCAATAATATGACAATAAAATGATGACAAACATAGCATCCaaaatttatttcaatttcacagtGTTAGAGCTATTAGGACAGATGAATTCAAATATTGTACCATCAATATAACACCATATCAgaatcatgttttatatatatgcatttataaaattaCACTTTATTGTGCATTAAAGTCATGCAAGTGTGAACAAAcacaatttgtaacagaaatgaTTATCTGGAACTTAATTCAGTCTACTTTTGAACATCTGCCTTATGGAAGTTAACActcttcaatttaaattaaagtcaaACGCGCACAGTACCCATACTCACAGTGTTGTAACTGCTCGGAAATAAATGGTATTGGAAGCAACTTGATATGCAGCACATATTCTTGGCAATCTCTGAATTGTCTTTGTTCGTATAAAAAACGTGGCACGTCAATGCCTTGCATACAGTGATCATTACACAGAAGCAACTGATCCAgcaatattttgttgaaaagaTCACAGTGTCACCGATTCAATATAACTGCAATTGATACCTCTATCAGTAAACTCCTAGGGTATAATATCCTGCACAGTACCTTCTTATAAGAGGTGTCCAAAACAGCCAGCATCCCTATTACTAGTAAAGACAACCTCACAGGCAATATGAGCTCCTattaaaaagcacacatttcaaCAGGAGAACAGTATATATGTGAGAGTGTGGCCAGTTATACAATTCGAAATCGaaagttgaataaatatatgaacGTACATATACTATGAAGACAGCATGTTCCTCCCTTCTGTGCGTTTCCTGCTCTGCATTTCTGTCTGCTGTACACACTTTAAGACGTTTGTAAGAAAAAGGCATTTCACTGCTTAATGAGGCTAGCATGCTGCAGATGAAGCATATTCAGCAATAAAACCCTGAATATATCCTAGCGAGAGAGTCAGACGTGCTTTGATGAGAACAATCTGAAAGGTAGAagacagaaaactaaaaacacaaaactatgtATTGGCAAAACTGGAACagaacatatttacattaaaaaccgAGAACGCAACTCGGcacaaatacagatacaaacaTTAGTAGTCAAACAGCAGtgaaaatatcaatattatatcaatattaaaacaagtgGTTTCGGTCTGCACTATTCCAActtagataaaataaaataataataatcttgcaCACCATATTTAATGTCCGGCGTTTTTGTTCATGTTCTCGAAGTTCATTTTGCTGTATGACTAACTTAGCATAAAACTCATCAAATGGAAATGCACAGAATGGGGAATATAGTAGCAGCAGCTGAAAGCAACATACACTGATTTAAATAAGCCAAACAGTATTTTTCAGGGTTACCTCTGATAGGACTAGACCGATTAtgtgcaagaaaaaaacaacacgaACTCCAGAAAGCATGACGGAGTGTGTGCAGGAAGGAACTGAACAACAGACAACACTGCTGCTAACCCTCAGCACAGTACACATCAGTGTGTGTTTAACTGTGATGGTCGACGGTACACAGACCCAGATGAAGCTACAATGAATACTCACATGAATAGAGCAGTTGTAATGTAAGAGTCGGGACACCGGGCTGGTTTTTCAATGCTCTGCGCAGGTGTAAATCACTGGGGCTTTGCGTCTGTGTACAGCCAACTACATCAGGCACTATTGCAATTTTAGATTATTTAAAAGGGAGTGGCAAGAACTGAAGTGAACatgagtaaaacaaatgtaaaacaaactagTTGCTCCAGTTTATTAAGAGggtaattgtttttcttgtaattgTAAGCCCCTTTATGTGAATTTGTGTAAAGATACGATCACTGCCAATCACTTTAGAGAATCCCAACACAATAACTGATGTAAATGAgattgtacaactgtattttaaatttgcactagaaattaatttacaataatattgGTATACATTTAGAGCATTACATTATGCTAGTGTATAAGTaatgtaaagtaaaacaaacaacactatATTTCCATTTGAAGCGGAGTGGACAGGATTGAAATCCAGGGCTTTTGTTCTTCATGCGCAACATGAGTCCTTTTTAATAACACAATGGATAATATACTAATATCATGAAATGTCAATGCAAACTCAAAACCatttcaaacataaaaatgaagttGACAGTTTTTATCATTGAACACATAATGGGGCAGTTCTTTGAAAACAAGATGGCACATAAACTTGTTTTGAGAGGGAAGAAAAATCAGCTTTTACACTGACGTCCATCTATAATAAAATGTTCCACAATCACTTTTGGACTACAATGAAATGTATACTTCAGGATACAACTACCCAAACCACTGGTACTgtgaacaaacacattttactcGTAACGATCTAAcgtaattgtattaaattcttTGCCGGAGTTTATTGCCAAATATACATTGAATGCTgtgattaaacacatttatgtaaGGCACACATTAAGCCTTAAATGCAAAAACTGATAGAGAAGGAATTATGCATTAAGCGCATATACAGTATTCATGGTTGTGGAACCaaacaaactgcaaatgttACTCAACATAAATACAAG

Function

GO:      GO:0043234

KEGG:

id description
K16681 CRB; protein crumbs

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU183496 lncRNA downstream 90364 17543163 ~ 17546332 (-) True AMCG00005158
TU183346 lncRNA downstream 671622 16964203 ~ 16965074 (-) True G145760
TU183239 lncRNA downstream 1261279 16374662 ~ 16375417 (-) True G145680
TU183125 lncRNA downstream 1657841 15958851 ~ 15978855 (-) True AMCG00005114
TU183044 lncRNA downstream 2101551 15503271 ~ 15535145 (-) False AMCG00005111
TU183641 lncRNA upstream 358159 18024765 ~ 18025674 (-) True G145995
TU183674 lncRNA upstream 631241 18297847 ~ 18298103 (-) True G146022
TU183675 lncRNA upstream 685261 18351867 ~ 18352132 (-) True G146023
TU183766 lncRNA upstream 1075278 18741884 ~ 18753533 (-) False AMCG00005207
TU183906 lncRNA upstream 1417389 19083995 ~ 19086041 (-) True G146189
AMCG00005158 mRNA downstream 90546 17543146 ~ 17546150 (-) False AMCG00005158
AMCG00005157 mRNA downstream 106209 17522613 ~ 17530487 (-) True AMCG00005157
AMCG00005159 mRNA downstream 145310 17474522 ~ 17491386 (-) True AMCG00005159
AMCG00005156 mRNA downstream 203041 17401569 ~ 17433655 (-) True AMCG00005156
AMCG00005153 mRNA downstream 358142 17261914 ~ 17278554 (-) True AMCG00005153
AMCG00005176 mRNA upstream 27577 17694183 ~ 17699719 (-) True AMCG00005176
AMCG00005175 mRNA upstream 41112 17707718 ~ 17735224 (-) True AMCG00005175
AMCG00005177 mRNA upstream 68702 17735308 ~ 17744787 (-) True AMCG00005177
AMCG00005174 mRNA upstream 94814 17761420 ~ 17775426 (-) True AMCG00005174
AMCG00005170 mRNA upstream 305748 17972354 ~ 17975649 (-) True AMCG00005170
TU182803 other downstream 2669073 14964579 ~ 14967623 (-) False AMCG00005077
TU182413 other downstream 4299950 13336209 ~ 13336746 (-) True G145046
TU182156 other downstream 5480318 12154125 ~ 12156378 (-) False AMCG00005011
TU182157 other downstream 5480318 12154125 ~ 12156378 (-) True AMCG00005011
TU181238 other downstream 8730102 8872885 ~ 8906594 (-) True G144115
TU183873 other upstream 1347941 19014547 ~ 19015663 (-) False AMCG00005214
TU184064 other upstream 1903453 19570059 ~ 19573318 (-) True G146313
TU184128 other upstream 2091626 19758232 ~ 19761446 (-) True AMCG00005240
TU184245 other upstream 2354104 20020710 ~ 20023507 (-) False AMCG00005256
TU184246 other upstream 2354104 20020710 ~ 20023507 (-) False AMCG00005256

Expression Profile