RNA id: AMCG00005209


Basic Information

Item Value
RNA id AMCG00005209
length 817
RNA type mRNA
GC content 0.50
exon number 2
gene id AMCG00005209
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 18733960 ~ 18738143 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACGTCCATCGTGACCGAGGCGATGATCGAGTCCTACACGCTGATGTTCATCGTGATGGCAACCTTCTTCATTTACTTCTGCGTCATGGTGTGGGCATTTTGCAACCCCAAACTTAGCGGCGAGGAAGAGGAGACGGAGGCGACCAAAGCCCCCGAAACTCACTGCAAGATGTCCAACAGCGTCCAGTACACGGGCATCCCACTGGAGCAAATCCGCACCGTGCAACCTCCAGACATGAGTGCCACTCGTCTGCAGAAGAGCGATGCCACAGATGTGTATTTCTACAACAGCTGGACCACCTCAAATAACAGACCTTATAACATGCAGCGGCTGTGGCCGTATGTGATTCAGAGGAAGTTAAGATGCCGACACCACTTTGCCCAAATTGCCACCTAGCCACTACAGAAGTCTCCCAGAATTCAATGGACCACCACTTCAACCGTCCAAACCCTCGTTCTGACCTGTCAGCGATGGACCCGACCCTCTCTGCAGAGCAACACCCTTCGCAGATGAATTCCACTTTGATAAAACAGCGAGACGAGCCCTTTGCAAGACTGTGGGCTTTAAAAGCACAATGCACTCAGACCCTGCATTCACTATGCATCGTGTGTCACTGTCGAGAGTATTGTCGGCACTACTACGTCATCGCCATCGTATGCTGGCTCACCTGCATTGTAACTACTGTATTGGTGGTCATCACAGCAGTTGTGTTTAGATAGGTCCAAGCTTTGTCAAGGGTTGAGAAACAGACCTGGGGCAGTAGGTTTGGCATGTTCCTTTCAGTTTAATTGAGATCATATTCAAAATATGCaga

Function

GO:

id name namespace
GO:0015672 monovalent inorganic cation transport biological_process
GO:0030001 metal ion transport biological_process
GO:0006812 cation transport biological_process
GO:0006814 sodium ion transport biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU183675 lncRNA downstream 381828 18351867 ~ 18352132 (-) True G146023
TU183674 lncRNA downstream 435857 18297847 ~ 18298103 (-) True G146022
TU183641 lncRNA downstream 708286 18024765 ~ 18025674 (-) True G145995
TU183496 lncRNA downstream 1187628 17543163 ~ 17546332 (-) True AMCG00005158
TU183346 lncRNA downstream 1768886 16964203 ~ 16965074 (-) True G145760
TU183766 lncRNA upstream 3741 18741884 ~ 18753533 (-) False AMCG00005207
TU183906 lncRNA upstream 345852 19083995 ~ 19086041 (-) True G146189
TU183949 lncRNA upstream 480248 19218391 ~ 19219758 (-) True G146227
TU183950 lncRNA upstream 480281 19218424 ~ 19219758 (-) False G146227
TU183990 lncRNA upstream 725864 19464007 ~ 19464975 (-) True G146257
AMCG00005196 mRNA downstream 49164 18679066 ~ 18684796 (-) True AMCG00005196
AMCG00005193 mRNA downstream 188547 18542551 ~ 18545413 (-) True AMCG00005193
AMCG00005178 mRNA downstream 624507 18103258 ~ 18109453 (-) True AMCG00005178
AMCG00005179 mRNA downstream 644845 18087405 ~ 18089115 (-) True AMCG00005179
AMCG00005186 mRNA downstream 660037 18070432 ~ 18073923 (-) True AMCG00005186
AMCG00005207 mRNA upstream 11715 18749858 ~ 18764298 (-) True AMCG00005207
AMCG00005208 mRNA upstream 37325 18775468 ~ 18781565 (-) True AMCG00005208
AMCG00005202 mRNA upstream 68928 18807071 ~ 18813335 (-) True AMCG00005202
AMCG00005200 mRNA upstream 88843 18826986 ~ 18830395 (-) True AMCG00005200
AMCG00005201 mRNA upstream 93814 18831957 ~ 18851968 (-) True AMCG00005201
TU182803 other downstream 3766337 14964579 ~ 14967623 (-) False AMCG00005077
TU182413 other downstream 5397214 13336209 ~ 13336746 (-) True G145046
TU182156 other downstream 6577582 12154125 ~ 12156378 (-) False AMCG00005011
TU182157 other downstream 6577582 12154125 ~ 12156378 (-) True AMCG00005011
TU181238 other downstream 9827366 8872885 ~ 8906594 (-) True G144115
TU183873 other upstream 276404 19014547 ~ 19015663 (-) False AMCG00005214
TU184064 other upstream 831916 19570059 ~ 19573318 (-) True G146313
TU184128 other upstream 1020089 19758232 ~ 19761446 (-) True AMCG00005240
TU184245 other upstream 1282567 20020710 ~ 20023507 (-) False AMCG00005256
TU184246 other upstream 1282567 20020710 ~ 20023507 (-) False AMCG00005256

Expression Profile