RNA id: AMCG00005214


Basic Information

Item Value
RNA id AMCG00005214
length 2583
RNA type mRNA
GC content 0.57
exon number 14
gene id AMCG00005214
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 19013077 ~ 19024461 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCTACCGGCCCTGAGGAGACGTTTGTGGACGCTACTCACAACGCCAGGGATGGAGAGGACTTTCTACAGTGCGTTATACCTATAGAGACCCCGAGCGACAACTACAGCTTGGCAGTAACGATCACACACGGCTTCACTGCTGTCAACCGCCCCGTGATGCGTGTGGTTCCCAGACAGATCGTGAAGCCGAACCCCCCTCTAAACCTGCAGTACAATATGACTCCTGCCGGGGAGCTGAGCCTCAGCTGGACCGACCCACTTCCAGCTTCTTACTCGGTTCAATATGAGGTCCGCTACTCCACAAACACATCTGAGGACACCTGGCAGCGTGTGGAAAGCGTGCCGGCGTCCCCTGCGACTCTCTCTGGCCTGAGAGCGGGCTTGGCGTACACGGCTCAGGTCCGCTGTAGGCTTCGCGACGGACCGGGCCTCTGGAGCGACTGGAGCGGCCATCtctacatatatttaaatgAAGTGACGTATCTCCCGGCGAGGATACTGGCCAGCACAGGCTCCAACGTCACTGTCTACTGCATATTCAACAACCGCAACGTGGACGCGAGAAACGTGGTGTGGTGGCTGAACACTCACGAGAAGGTTCCCGAGAGCCAGTACTCCGTCGTGAACGAGCGCGTGAGCAGCGTCACCCTGCTGAACGTGCGGCCGCAGAAGCGCCGGGGGAGGATTGGCTTCGACGTGCTGCAGTGCTGCCAGCAGGACGGCGAGAACTCCGTCTGCAATTACCGCTATGCCGCCATTTATGCCCAAGATATCAGTGTCGAGATCTCGTGTGAAACGAATGAATACCTGACCAATATGACATGCAAATGGACGCCAGGTTGGCCACAGGACAGCCAGGTCAAGTTCCTTTATcgGATCGGCCGCTCCTGCGCCGCCCTGGAGGCCGACTCGCGCTTCCCTCAGGCGGACGAGTGCCCGGCTTCGGGGCGCGGCTCCAACACCTGCACCTTCCAGCCCCTGTACATGTTGTTCTGCTACGCGATGTGGCTGGAGAACCAGCATGAGCTTGGCACGATGAAGTCCAACCTGACGTACGTCACGCCTATGGATGTGGGTGAGCAGCACAGACACTGTGTTTTGTCATGGTGTACTTTTGGCATGATGTTCTTGACGGTTTGCTGCGGCAGATTGGACGGACCCGGACACTGGAGCGTCTGGAGCAGCCCGGTCTACACTGCGGTTCACGACATTAGAGCGCCAGAATGGGGTCCTGATTTTTGGCGAGTTATCCAAGAGGATCCGGCAAAGAAACAGACCAGTGTCACTCTTCTCATGAAGCCTTTGAGAAGGGAAGACCTCTTCTGTTCAGTGGAGGGTTTTCAAGTTCAGCATCAAACCTCCACGGGTTCGACGTGGTCCGAGCATCTCAATGTGACCACGGCGCATACATTCGTTTGGACCGAAGACCAGCACAGTGTGTCGGTGTTGGCCTTCAACTCACGCGGTGCTTCGGTGATGAACTACAATTTGACACTAGCGAGGCACGCAAGCAGAGCTCGAGCGGTGCAGTCCTTCAGCGTGGCGCTCGTGAACAGCAGTTGCGCCGCCCTGTCGTGGTACTTCCTCCCGAACGTCTCCCTCCCGGAGTCTTTCATTATCGAGTGGAAACGGCGgcgcagggagagagagcagaactGGGCAAAGGCTGTGAAGTGGATCCGAGCACCCGTCAAAGCACGTGACTTTTACATATACGATGACAGGGGGCGGCCGCGGGGGGAACACGCCGCCTACGTCCTCCTGCTGATCATCGCGTTCCTGTCAATCGTCCTGTTCGTGACCCTGGCGATCTCTCAGCACCAAATGAAGAAACTGGTCTGGAAGGAAGTTCCCAATCCTAATAACTGCTCCTGGGCACAAGGAGTTGACTTCAAAAAAGCCGAGACCATCGAGAACCTGTTCAAGCACCCCGAGAGCCTGACCTCGTGTCCCCTCCTCCTGCAATCCGAGACGATCTCCGAGGCGGTGATCGTGGAGAATATGAAGCTCCCGGCGGGGAAGAAGCCGGCGTCTTTCTCCGAGGCGTCCCCATCTGCAGAGGAGGAATGCCCTCGTCCGGTCCACCAGAGCACCGCGGAGCCCGTGGTCCCCGAGCAGCCCCCCGCCACCAGCTCGGAGACCTCCGCCCAGTCCAGGATACAcagcctctgggaGGGTGACAATCCATCGGGCAAACACTCAACGCACGGAGATCCCAGGAACTCTTGCCCCTTCACGTCCTCAGAGGAGTTCTCCGAGGCCTCAGATCAGGATGATAACATTCTCGATGACACGGGTCCGGAGAGAGACCTCTACTACGTGGGCCTAGCTTCAAATGACGAGGAGGAaggggaagaggaggaagaggaacgATTCCTGAAAGAAGACGCTCAGATGCCCTATGGGGATCAGAGAGAAGAGCTTTTGCATGAATCCAATCCTTTATTGGGCTGCCACTCCATTCAGGATGTAAACAAGGACCACAAAGACACACCTGCAAAGAATATCCCTCTATATATGCCTCAGTTCCGAACAGTGTCCAGTAAAATTCAGCATCATCGAAAGCCTTCAGACATTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU183766 lncRNA downstream 259544 18741884 ~ 18753533 (-) False AMCG00005207
TU183675 lncRNA downstream 660945 18351867 ~ 18352132 (-) True G146023
TU183674 lncRNA downstream 714974 18297847 ~ 18298103 (-) True G146022
TU183641 lncRNA downstream 987403 18024765 ~ 18025674 (-) True G145995
TU183496 lncRNA downstream 1466745 17543163 ~ 17546332 (-) True AMCG00005158
TU183906 lncRNA upstream 59534 19083995 ~ 19086041 (-) True G146189
TU183949 lncRNA upstream 193930 19218391 ~ 19219758 (-) True G146227
TU183950 lncRNA upstream 193963 19218424 ~ 19219758 (-) False G146227
TU183990 lncRNA upstream 439546 19464007 ~ 19464975 (-) True G146257
TU184066 lncRNA upstream 586305 19610766 ~ 19611005 (-) True G146315
AMCG00005216 mRNA downstream 31037 18978635 ~ 18982040 (-) True AMCG00005216
AMCG00005211 mRNA downstream 40215 18911161 ~ 18972862 (-) True AMCG00005211
AMCG00005210 mRNA downstream 103085 18893081 ~ 18909992 (-) True AMCG00005210
AMCG00005201 mRNA downstream 161109 18831957 ~ 18851968 (-) True AMCG00005201
AMCG00005200 mRNA downstream 182682 18826986 ~ 18830395 (-) True AMCG00005200
AMCG00005212 mRNA upstream 18359 19042820 ~ 19047365 (-) True AMCG00005212
AMCG00005215 mRNA upstream 28517 19052978 ~ 19067107 (-) True AMCG00005215
AMCG00005213 mRNA upstream 47694 19072155 ~ 19080603 (-) True AMCG00005213
AMCG00005218 mRNA upstream 95703 19120164 ~ 19146827 (-) True AMCG00005218
AMCG00005224 mRNA upstream 127529 19151990 ~ 19201412 (-) True AMCG00005224
TU182803 other downstream 4045454 14964579 ~ 14967623 (-) False AMCG00005077
TU182413 other downstream 5676331 13336209 ~ 13336746 (-) True G145046
TU182156 other downstream 6856699 12154125 ~ 12156378 (-) False AMCG00005011
TU182157 other downstream 6856699 12154125 ~ 12156378 (-) True AMCG00005011
TU181238 other downstream 10106483 8872885 ~ 8906594 (-) True G144115
TU184064 other upstream 545598 19570059 ~ 19573318 (-) True G146313
TU184128 other upstream 733771 19758232 ~ 19761446 (-) True AMCG00005240
TU184245 other upstream 996249 20020710 ~ 20023507 (-) False AMCG00005256
TU184246 other upstream 996249 20020710 ~ 20023507 (-) False AMCG00005256
TU184357 other upstream 1249930 20274391 ~ 20279746 (-) True G146532

Expression Profile