RNA id: TU182139


Basic Information

Item Value
RNA id TU182139
length 531
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id G144826
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 12023514 ~ 12029449 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCGAATGAACCAATGCTGCTCCCCCGACGAAAGCATGATTGAACAATAAGAGTGAATCTAAACATCAAATATGGAAACTGTGATCTTACACACACTATTGCAAATCAAAGTTTGTAATCCAAGCACACGAAACACTTCCCTGCGCTGCATACCGCGCCGCCGGCATTCAAAGGACCTCCATAGGCCCCCTACTGGGGCTGTCCCGGTCAGCGCCTGAGAGAAACGCCGCTTTGCACATTCAGGAGAGAACAATATTCACTGACAGGTTTTGTATTGtgACAAACATTTCAACGTAAGTGACctatacagaataaaaacaactcCCCATACCTTGCAACCAACTGCAAGCAAGGCATGAAGAACTACAATGGTTGAAACGGTTGCTATTGCAATCCTGCGGTGGTCATCTCGAACAGCCGGCCAAAACGTCATGACCAGAACCGACCCGGACAGGCACATGGCGATCACGATGGACACCCATCTCACAGACTCATCAGGAATAATCCACAAGACCTGCCCACGCAATAGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU182132 lncRNA downstream 13143 12009918 ~ 12010371 (-) True G144821
TU181947 lncRNA downstream 451104 11571190 ~ 11572410 (-) True G144672
TU181934 lncRNA downstream 517512 11505678 ~ 11506002 (-) True G144659
TU181932 lncRNA downstream 522439 11499172 ~ 11501075 (-) True G144657
TU181875 lncRNA downstream 695033 11322583 ~ 11328481 (-) True G144614
TU182205 lncRNA upstream 273130 12302579 ~ 12302836 (-) True G144877
TU182206 lncRNA upstream 273516 12302965 ~ 12303263 (-) True G144878
TU182207 lncRNA upstream 273962 12303411 ~ 12303620 (-) True G144879
TU182208 lncRNA upstream 275174 12304623 ~ 12304887 (-) True G144880
TU182217 lncRNA upstream 316692 12346141 ~ 12348328 (-) True AMCG00005022
AMCG00004987 mRNA downstream 3755 12011353 ~ 12019759 (-) True AMCG00004987
AMCG00004989 mRNA downstream 20310 12001111 ~ 12003204 (-) True AMCG00004989
AMCG00004990 mRNA downstream 30417 11990650 ~ 11993097 (-) True AMCG00004990
AMCG00004988 mRNA downstream 38650 11981168 ~ 11984864 (-) True AMCG00004988
AMCG00004980 mRNA downstream 109089 11898180 ~ 11914425 (-) True AMCG00004980
AMCG00005011 mRNA upstream 105929 12135378 ~ 12156367 (-) False AMCG00005011
AMCG00005010 mRNA upstream 127131 12156580 ~ 12159972 (-) True AMCG00005010
AMCG00005009 mRNA upstream 134381 12163830 ~ 12172230 (-) True AMCG00005009
AMCG00005004 mRNA upstream 154491 12183940 ~ 12199070 (-) True AMCG00005004
AMCG00005021 mRNA upstream 254945 12284394 ~ 12288518 (-) True AMCG00005021
TU181238 other downstream 3116920 8872885 ~ 8906594 (-) True G144115
TU181227 other downstream 3182526 8836360 ~ 8840988 (-) False AMCG00004894
TU181155 other downstream 3646513 8353989 ~ 8377001 (-) True G144050
TU180667 other downstream 6240330 5736809 ~ 5783184 (-) True G143659
TU180357 other downstream 7907100 4113747 ~ 4116414 (-) False AMCG00004819
TU182156 other upstream 124676 12154125 ~ 12156378 (-) False AMCG00005011
TU182157 other upstream 124676 12154125 ~ 12156378 (-) True AMCG00005011
TU182413 other upstream 1306760 13336209 ~ 13336746 (-) True G145046
TU182803 other upstream 2935130 14964579 ~ 14967623 (-) False AMCG00005077
TU183873 other upstream 6985098 19014547 ~ 19015663 (-) False AMCG00005214

Expression Profile