RNA id: TU182207


Basic Information

Item Value
RNA id TU182207
length 210
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G144879
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 12303411 ~ 12303620 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATTTGTACACGTTCTTTGATACTGAATGACATCAAACACTaactaataaaatgttttggagTATGGCACAATCCCCACCACTAACAAAGACCTAACTTGATGGATGCAATTAATCCTAAAACATGATTCAAGTTCAATGTTTTTCTATCAGATGTTTGGTCTATCATTGACTTGGATATATGGAAATGATAAACAGAAGGCATAATCaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU182206 lncRNA downstream 148 12302965 ~ 12303263 (-) True G144878
TU182205 lncRNA downstream 575 12302579 ~ 12302836 (-) True G144877
TU182139 lncRNA downstream 273962 12023514 ~ 12029449 (-) True G144826
TU182132 lncRNA downstream 293040 12009918 ~ 12010371 (-) True G144821
TU181947 lncRNA downstream 731001 11571190 ~ 11572410 (-) True G144672
TU182208 lncRNA upstream 1003 12304623 ~ 12304887 (-) True G144880
TU182217 lncRNA upstream 42521 12346141 ~ 12348328 (-) True AMCG00005022
TU182222 lncRNA upstream 63803 12367423 ~ 12368468 (-) True G144893
TU182259 lncRNA upstream 312095 12615715 ~ 12615950 (-) True G144920
TU182287 lncRNA upstream 476953 12780573 ~ 12781170 (-) True G144941
AMCG00005020 mRNA downstream 2902 12298967 ~ 12300509 (-) True AMCG00005020
AMCG00005017 mRNA downstream 5629 12289910 ~ 12297782 (-) True AMCG00005017
AMCG00005021 mRNA downstream 14893 12284394 ~ 12288518 (-) True AMCG00005021
AMCG00005004 mRNA downstream 104341 12183940 ~ 12199070 (-) True AMCG00005004
AMCG00005009 mRNA downstream 131181 12163830 ~ 12172230 (-) True AMCG00005009
AMCG00005018 mRNA upstream 6731 12310351 ~ 12315652 (-) True AMCG00005018
AMCG00005019 mRNA upstream 36548 12340168 ~ 12344668 (-) True AMCG00005019
AMCG00005022 mRNA upstream 41051 12344671 ~ 12346490 (-) False AMCG00005022
AMCG00005012 mRNA upstream 140732 12444352 ~ 12454372 (-) True AMCG00005012
AMCG00005029 mRNA upstream 476651 12780271 ~ 12801667 (-) True AMCG00005029
TU182156 other downstream 147033 12154125 ~ 12156378 (-) False AMCG00005011
TU182157 other downstream 147033 12154125 ~ 12156378 (-) True AMCG00005011
TU181238 other downstream 3396817 8872885 ~ 8906594 (-) True G144115
TU181227 other downstream 3462423 8836360 ~ 8840988 (-) False AMCG00004894
TU181155 other downstream 3926410 8353989 ~ 8377001 (-) True G144050
TU182413 other upstream 1032589 13336209 ~ 13336746 (-) True G145046
TU182803 other upstream 2660959 14964579 ~ 14967623 (-) False AMCG00005077
TU183873 other upstream 6710927 19014547 ~ 19015663 (-) False AMCG00005214
TU184064 other upstream 7266439 19570059 ~ 19573318 (-) True G146313
TU184128 other upstream 7454612 19758232 ~ 19761446 (-) True AMCG00005240

Expression Profile