RNA id: TU184066


Basic Information

Item Value
RNA id TU184066
length 240
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G146315
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 19610766 ~ 19611005 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gtccaatcgagaggatcccattcgccccatcgtgctcgtctggtgtccattaataactaagtgatcaaggatcctatccagtctgtttttgaatgttcccaaattgtctcttcagccacatcgctggggagtttgttcagattgtgacgcctctctgtgtgaagaagtgtctcctgttttctgtctcgaatgccttgaagcccaatttccatttgtgtccccgggtgcgtgtgtccctgc

Function

GO: NA

KEGG:

id description
ko00512 Mucin type O-glycan biosynthesis

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU183990 lncRNA downstream 145791 19464007 ~ 19464975 (-) True G146257
TU183949 lncRNA downstream 391008 19218391 ~ 19219758 (-) True G146227
TU183950 lncRNA downstream 391008 19218424 ~ 19219758 (-) False G146227
TU183906 lncRNA downstream 524725 19083995 ~ 19086041 (-) True G146189
TU183766 lncRNA downstream 857233 18741884 ~ 18753533 (-) False AMCG00005207
TU184074 lncRNA upstream 92999 19704004 ~ 19732117 (-) True G146322
TU184123 lncRNA upstream 143191 19754196 ~ 19754744 (-) True G146347
TU184124 lncRNA upstream 145242 19756247 ~ 19757237 (-) True G146348
TU184135 lncRNA upstream 160767 19771772 ~ 19774991 (-) True G146358
TU184261 lncRNA upstream 439111 20050116 ~ 20052921 (-) False G146461
AMCG00005228 mRNA downstream 10483 19575236 ~ 19600283 (-) True AMCG00005228
AMCG00005233 mRNA downstream 81084 19523812 ~ 19529682 (-) True AMCG00005233
AMCG00005234 mRNA downstream 118251 19488650 ~ 19492515 (-) True AMCG00005234
AMCG00005227 mRNA downstream 135323 19466196 ~ 19475443 (-) True AMCG00005227
AMCG00005222 mRNA downstream 243501 19366141 ~ 19367265 (-) True AMCG00005222
AMCG00005230 mRNA upstream 12250 19623255 ~ 19627636 (-) True AMCG00005230
AMCG00005229 mRNA upstream 53096 19664101 ~ 19669052 (-) True AMCG00005229
AMCG00005241 mRNA upstream 115939 19726944 ~ 19741365 (-) True AMCG00005241
AMCG00005240 mRNA upstream 147568 19758573 ~ 19761337 (-) False AMCG00005240
AMCG00005250 mRNA upstream 173869 19784874 ~ 19799356 (-) True AMCG00005250
TU184064 other downstream 37448 19570059 ~ 19573318 (-) True G146313
TU183873 other downstream 595103 19014547 ~ 19015663 (-) False AMCG00005214
TU182803 other downstream 4643143 14964579 ~ 14967623 (-) False AMCG00005077
TU182413 other downstream 6274020 13336209 ~ 13336746 (-) True G145046
TU182156 other downstream 7454388 12154125 ~ 12156378 (-) False AMCG00005011
TU184128 other upstream 147227 19758232 ~ 19761446 (-) True AMCG00005240
TU184245 other upstream 409705 20020710 ~ 20023507 (-) False AMCG00005256
TU184246 other upstream 409705 20020710 ~ 20023507 (-) False AMCG00005256
TU184357 other upstream 663386 20274391 ~ 20279746 (-) True G146532
TU184470 other upstream 998349 20609354 ~ 20610643 (-) True G146618

Expression Profile