RNA id: AMCG00005417


Basic Information

Item Value
RNA id AMCG00005417
length 1182
RNA type mRNA
GC content 0.69
exon number 1
gene id AMCG00005417
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 1299366 ~ 1300547 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCGGAGGTCAGCCGGAGGTTTGGGTCGGGGGCGTACAGGGCCCTGCTGGGACACGGCAGGCCGGCGCTTGCAGGCTCGGGCACAGAGGACGCCCAGGCGAGGGGAGCGCTGGCCGGGTGGGCGGTGGACCGGGCGCCTGACAGACCGGCGGCGCGGTTGAGGGGCGCAGACCGCGCTGCCTGCTCGCTCCGTGTCGGTTTGACTCGGTCAGTCGCTGCCGTGGGGCTCGGTTGGGACCAGGCCGTATTGCTCTCCGCTCCTCCCGGTGTTGGAAGTGCTGACGCGGTGGTGGCCGGTGTGCTGCGCCTTACCGACGTGCGGGGCAATGGGCCGACATTGTGTCCCTCGGCAGAGGCGGCTTGTACCGGGCAGGACAGGGCGAGAGACCGAGCACAGTCAGCAGCGGGCAGAGGCTCGTCTCAAAGGGCAGCTATGACCAGGCAGGCCAGCTGGAGGAGCAGGGTCTTCCTGAGCCCCGAGATGCCCAGGGCAGGACAGCAGCTGCGGAGGGCTTTCGGCACGGCCAGGCTGCTCCAGAGGAACGCCTTGCTTGGCGGCTCGGCCCTGAAGGCCGGTGCCGAGCTGCTGCCGGGTTCCAGGGCTTACAGCCAGGACAGCGAGGTGCCACCGCTGCACAGGAGCCGGACGGCCTACTACGACATCCTGAGGGTGTCCCCCGGCGCCTCGCAGTCCCAGATAAAGACTGCCTACTATAAGCAGTCCTTCATCTACCACCCAGACAAGAACGCGGGCAGCGAGGAGGCCACGCTGCGCTTCTCCGAGATCAGCGAGGCCTACAGCGTGCTGGGCAGCATCGGGCTGCGGCGGAAGTACGACCACGGGATCCTGAGCCCCGCCGACGTCCAGGGAGCCACCCGGCCCTCGAGCAAGGGGGCCGCCGCCACCGCCTCAGGCCCAGCTGCGCAGCAGCGGTCGCGCAGCTCCCCCATGGCGGGTGTGGGTGCCAAGCCCATGTTTGACTTCGACGCGTTCTACCAGGCGCACTACAGCGAGCAGCTGCAGAGGGAGAAGATGCTGCGCTGGCGGAGGGAGCAGCAGCGCCAGTGCAAAGAGGACCTGCACAAGCGCTGGCAGCTGGGCAAGATGACCGAGGTGTCGGTGGGCTTGCTGCTCGCTCTCGGCCTGGCCATCCTGTTCAGCCTGCAGTCCAGCGACTGA

Function

GO: NA

KEGG:

id description
K19374 DNAJC30; DnaJ homolog subfamily C member 30

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191548 lncRNA downstream 40440 1219327 ~ 1258926 (-) False G152133
TU191558 lncRNA downstream 40440 1219327 ~ 1258926 (-) True G152133
TU191494 lncRNA downstream 228710 1065459 ~ 1070656 (-) True G152085
TU191479 lncRNA downstream 289627 998354 ~ 1009739 (-) True G152071
TU191347 lncRNA downstream 608424 690659 ~ 690942 (-) True G151979
TU191612 lncRNA upstream 96794 1397341 ~ 1398392 (-) True G152178
TU191631 lncRNA upstream 157690 1458237 ~ 1458662 (-) True G152197
TU191735 lncRNA upstream 221195 1521742 ~ 1570178 (-) False G152271
TU191737 lncRNA upstream 266571 1567118 ~ 1615497 (-) True G152271
TU191799 lncRNA upstream 392202 1692749 ~ 1693555 (-) True G152320
AMCG00005389 mRNA downstream 187476 1109601 ~ 1111890 (-) True AMCG00005389
AMCG00005473 mRNA downstream 236571 1059253 ~ 1062795 (-) True AMCG00005473
AMCG00005475 mRNA downstream 247958 1036096 ~ 1051408 (-) True AMCG00005475
AMCG00005476 mRNA downstream 272117 1023035 ~ 1027249 (-) True AMCG00005476
AMCG00005474 mRNA downstream 278249 1014652 ~ 1021117 (-) True AMCG00005474
AMCG00005419 mRNA upstream 70795 1371342 ~ 1376473 (-) True AMCG00005419
AMCG00005427 mRNA upstream 131357 1431904 ~ 1436308 (-) True AMCG00005427
AMCG00005428 mRNA upstream 161685 1462232 ~ 1467875 (-) True AMCG00005428
AMCG00005426 mRNA upstream 179629 1480176 ~ 1485828 (-) True AMCG00005426
AMCG00005440 mRNA upstream 216936 1517483 ~ 1523285 (-) True AMCG00005440
TU191554 other downstream 40440 1219327 ~ 1258926 (-) False G152133
TU191268 other downstream 1235638 62621 ~ 63728 (-) False AMCG00005407
TU191607 other upstream 70836 1371383 ~ 1371737 (-) False AMCG00005419
TU191743 other upstream 205393 1505940 ~ 1507628 (-) True G152277
TU191734 other upstream 312226 1612773 ~ 1615497 (-) False G152271
TU191793 other upstream 408136 1708683 ~ 1721202 (-) True AMCG00005461
TU191946 other upstream 896807 2197354 ~ 2329684 (-) False AMCG00005532

Expression Profile