RNA id: AMCG00005421


Basic Information

Item Value
RNA id AMCG00005421
length 267
RNA type mRNA
GC content 0.56
exon number 3
gene id AMCG00005421
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 1839567 ~ 1857205 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTTCTCTCAATGGTTCTTTgattTGGGGATGGAGTCAACCTCCCTGGATGACGTCCTGTATCGCTACGCCAGCTTCCGGAACCTCGTGGACCCCATTACCCATGACCTCATCATCAGCCTGGCACGCTACATCCATTGCCCTAAGACGGATGGAGATGCTCTGGGTGCCATGGAGAAAGTGTGCCGGCAGCTCACCTACCACCTGAGCCCACATTCACAGTGGAGACGGCAGGGACTGATGAAACGCAAACCCCAGGCCTGGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191821 lncRNA downstream 86829 1745953 ~ 1752738 (-) True G152335
TU191799 lncRNA downstream 146012 1692749 ~ 1693555 (-) True G152320
TU191737 lncRNA downstream 224070 1567118 ~ 1615497 (-) True G152271
TU191735 lncRNA downstream 269389 1521742 ~ 1570178 (-) False G152271
TU191631 lncRNA downstream 380905 1458237 ~ 1458662 (-) True G152197
TU191837 lncRNA upstream 83818 1941023 ~ 1946800 (-) True G152344
TU191933 lncRNA upstream 310399 2167604 ~ 2175954 (-) True G152424
TU191973 lncRNA upstream 437628 2294833 ~ 2300752 (-) False G152452
TU191974 lncRNA upstream 437628 2294833 ~ 2318672 (-) True G152452
TU191989 lncRNA upstream 549320 2406525 ~ 2407385 (-) False AMCG00005517
AMCG00005420 mRNA downstream 31487 1802917 ~ 1808080 (-) True AMCG00005420
AMCG00005462 mRNA downstream 65116 1754913 ~ 1774451 (-) True AMCG00005462
AMCG00005461 mRNA downstream 116067 1708687 ~ 1723500 (-) False AMCG00005461
AMCG00005460 mRNA downstream 131781 1697277 ~ 1707786 (-) True AMCG00005460
AMCG00005447 mRNA downstream 154107 1675244 ~ 1685460 (-) True AMCG00005447
AMCG00005431 mRNA upstream 92016 1949221 ~ 1956060 (-) True AMCG00005431
AMCG00005488 mRNA upstream 200777 2057982 ~ 2059253 (-) True AMCG00005488
AMCG00005489 mRNA upstream 213160 2070365 ~ 2073296 (-) True AMCG00005489
AMCG00005533 mRNA upstream 360504 2217709 ~ 2222776 (-) True AMCG00005533
AMCG00005532 mRNA upstream 382418 2239623 ~ 2271323 (-) True AMCG00005532
TU191793 other downstream 118365 1708683 ~ 1721202 (-) True AMCG00005461
TU191734 other downstream 224070 1612773 ~ 1615497 (-) False G152271
TU191743 other downstream 331939 1505940 ~ 1507628 (-) True G152277
TU191607 other downstream 467830 1371383 ~ 1371737 (-) False AMCG00005419
TU191554 other downstream 580641 1219327 ~ 1258926 (-) False G152133
TU191946 other upstream 340149 2197354 ~ 2329684 (-) False AMCG00005532
TU192197 other upstream 1018081 2875286 ~ 2876009 (-) False AMCG00005491
TU192222 other upstream 1214655 3071860 ~ 3090714 (-) False G152645
TU192573 other upstream 2431460 4288665 ~ 4289892 (-) False AMCG00005539
TU192831 other upstream 3443564 5300769 ~ 5302198 (-) True G153130

Expression Profile