RNA id: AMCG00005438


Basic Information

Item Value
RNA id AMCG00005438
length 1380
RNA type mRNA
GC content 0.65
exon number 9
gene id AMCG00005438
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 1570753 ~ 1574756 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCCTTGTACGTGAAAGCCGCCGAGATCCTGGAGAAGAACATCAAGCAGCTGTTCGCCCTGGTGTGCGAGACCCTGAAGTTCTCCGCTGTCCTGGAGGACATCATCACCAGCACGGGCGTGCTCAAGGAGAAGAAGCTCAAAATGAATGTTGCCAAGGTCCTGGTGTACGACCTGCTGTTCGGCCAGGGGGTGAAGTGCGGCGGCGTCTGGAAGGCCCTGATGACAAAGCACGGCCCCCGGCTGCAGGCGGCGCTGGCCCGGCTCAAGGTCAAGAAGAAGGTCAGCCGGAACCAGGACCTGCTGCCCACGACCGGCAAGCCTACCGAGGCCCAGCTGCCACGCTACGCCCGTGTGAACACGCTGAAGACCACGCTGGAGGACACCATTGACTACCTGAAGAGAGAGGGCTTCTCCTACCTGGGCCGAGCCAGCAGCCTGGAGGACCTGCGCCGACTCTCGGGGAAGAACTTCCTGTGTGACCTTCACCTTCCGGAGCTGCTGGTCTTCTCGCCCAAGACCGACCTCCACACGCACTTCCTGTACCAGGCGGGCCACCTCATCCTGCAGGACAAGGCCAGCTGCCTCCCCGCGTTCCTCCTGAAACCCCCTGCTGGGGCCCATGTCCTGGACGCCTGCGCCGCCCCCGGGAACAAGACCAGCCACCTGGCCGCGCTGCTGGGAAATAAAGGGAAGTTGTTTGCGTTTGACCTGGATGCGAAGCGATTGTCCACCATGAGCACCCTGCTGCTCCGGGCCGGGGTCACCTGTCACCAGCTGGCCCACCAGGACTTCCTGACGGTCGACCCGCAAGACCCCCGCTACAGCCAGGTGGAGTACATCCTGCTGGACCCGTCCTGCAGCGGCTCAGGCATGCTGGGCCGGCCGGCGCAGGAGGCAGAGGCGGGGGAGGAGGCGGGGCGGCTGGCGGCGCTGGCGGGGTTCCAGATGCGCTGTGTGCGCCATGCCCTGCGCTTCCCCCGGCTGCGGCGCCTCACCTACTCCACCTGCTCCGTGCACGCGCAAGAGAATGAGGAGGTGGTCAGCGCTTGCCTGCAGGACAACCCCGGCTTCAGACTGGTGTCCTTGTTGCCTGGCTGGCAGGAGCGAGGGCACCCCCCACTGCATCAGTGCCTGCGCGCCAGCCCCACACAAACCCTCACCCATGGCTTCTTCGTGGCCATGCTAGAGCGCCGGCCCCCGGGGGAGGTGGTGGAGAAAGAGGATGGCACCAACACACTCCTCCCTGCATCAGTGACATCAGCCCCTGACAGCAAGGGCGAGGAGGAAGCCCCCCATCCCAGCACCCCACAGACGGAGGctaagaagaagaggaagaggaagagagggaaagggaaggCCAGGGTCCTAGCGGACTGA

Function

GO:

id name namespace
GO:0016740 transferase activity molecular_function

KEGG:

id description
K15264 NSUN5, WBSCR20, RCM1; 25S rRNA (cytosine2278-C5)-methyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191735 lncRNA downstream 575 1521742 ~ 1570178 (-) False G152271
TU191631 lncRNA downstream 112091 1458237 ~ 1458662 (-) True G152197
TU191612 lncRNA downstream 172361 1397341 ~ 1398392 (-) True G152178
TU191552 lncRNA downstream 235313 1257297 ~ 1335440 (-) False G152133
TU191548 lncRNA downstream 311827 1219327 ~ 1258926 (-) False G152133
TU191799 lncRNA upstream 117993 1692749 ~ 1693555 (-) True G152320
TU191821 lncRNA upstream 171197 1745953 ~ 1752738 (-) True G152335
TU191837 lncRNA upstream 366267 1941023 ~ 1946800 (-) True G152344
TU191933 lncRNA upstream 592848 2167604 ~ 2175954 (-) True G152424
TU191973 lncRNA upstream 720077 2294833 ~ 2300752 (-) False G152452
AMCG00005439 mRNA downstream 33885 1523660 ~ 1536868 (-) True AMCG00005439
AMCG00005440 mRNA downstream 47468 1517483 ~ 1523285 (-) True AMCG00005440
AMCG00005426 mRNA downstream 84925 1480176 ~ 1485828 (-) True AMCG00005426
AMCG00005428 mRNA downstream 102878 1462232 ~ 1467875 (-) True AMCG00005428
AMCG00005427 mRNA downstream 134445 1431904 ~ 1436308 (-) True AMCG00005427
AMCG00005445 mRNA upstream 60989 1635745 ~ 1637496 (-) True AMCG00005445
AMCG00005446 mRNA upstream 85271 1660027 ~ 1666365 (-) True AMCG00005446
AMCG00005447 mRNA upstream 100488 1675244 ~ 1685460 (-) True AMCG00005447
AMCG00005460 mRNA upstream 122521 1697277 ~ 1707786 (-) True AMCG00005460
AMCG00005461 mRNA upstream 133931 1708687 ~ 1723500 (-) False AMCG00005461
TU191743 other downstream 63125 1505940 ~ 1507628 (-) True G152277
TU191607 other downstream 199016 1371383 ~ 1371737 (-) False AMCG00005419
TU191554 other downstream 311827 1219327 ~ 1258926 (-) False G152133
TU191268 other downstream 1507025 62621 ~ 63728 (-) False AMCG00005407
TU191734 other upstream 38017 1612773 ~ 1615497 (-) False G152271
TU191793 other upstream 133927 1708683 ~ 1721202 (-) True AMCG00005461
TU191946 other upstream 622598 2197354 ~ 2329684 (-) False AMCG00005532
TU192197 other upstream 1300530 2875286 ~ 2876009 (-) False AMCG00005491
TU192222 other upstream 1497104 3071860 ~ 3090714 (-) False G152645

Expression Profile