RNA id: AMCG00005460


Basic Information

Item Value
RNA id AMCG00005460
length 1630
RNA type mRNA
GC content 0.54
exon number 11
gene id AMCG00005460
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 1697277 ~ 1707786 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GATGTGGTCGACAACGGGGTTTACAAACAGGAAGCCCCCGCAGCTCGAGAGCCCTGCGCCtcgtctctctttctctcacactcactctctctcactctgacGCCTCGCCCTCCTCTAGAGAGGCAGCCCGGTGAAGCTGCCCATAACGCCAGGCTCGACGAGGACcgaggaggagggggtgttGTGCTGGGGGTAGAACTCTGCTCCCCCGGCTATAGTGCTGAGGAGGCGGGCGATGCGGAGGGGGGTCCAGGTATGAACGCCGTAACCACCCAGCAGGGGGTGGTCCTGGTCCTGGCCTCCATCATGCCCCTTGtggctctgctgctgctgtgcctgTGCTGCCAGAGGAAACCCCAGGTGATAAAAGAAGAGAACCAAATCTACGACCCCCAGCTGTTTGACGCGACACAACCGGATCGAAAGGAAGCTGCCCCCATCGCCGCCCCAGATTTCATGGAGACATTGCAGAACACAGAAGCAGCGGGAGCCATCGAGGTCCAAGGACCGTACCAAAATGTGGAGGCCCTAGGAGAGGGCTGTGAACCCATGGATCCCATTGGAGGGTCACCCTACCAGAACCTGCCCCAGGACGGCAAGGAGAAGGATGCCTCCGATTATGAAAACAGTGATTTCCTGACCAACATGGCTACAGAGAAAGAAGACAGTGGTGAAGAAGCGGATTACGTCAACTCGCTGTCCGTGATGTCGTGAGAGACGCCCCCGACGCAGGGACAGAAGCGACCGCTCCACCCCCCCGACACCGCGCTGGGTCCCCAGGGATGTGGGACAGGATGGGGATCTCACAGGAGAGACCCCGGGCAGAACCCAGACCATCTCACTGGCCTTAGAGACACTGGGGTGCAAAACCAAACATGTACACTTGGTTTggcacaattatttatttagctttttccAGTATCTTCTCAGCTGACAGAATTGATGAGCTCAATTAACCGATAGAGATTAGCCGATAGAGACTGCTGTGCCAGCGGCCCAAACTGAGCTGTGACGAATTTAAATAGGGGGTGGAAACCTCCACACAGTGAACTGTCAGGTAACGGGCAAAGACACGATACCCTGCAGTAACCCAGGTCCCTGTGTATTTGCATCTCGggaataaatacagcaaaactATTGAGCAGAGGAAACTACAGACACCTGTGTGTTTCCCCCATTTTAATCAGACTCTTTATGAACAGCAGAACGAAGCCCAGATCCAGAGACTGCTCGAATCGAGAGCTCTCTTCTAGTTCTCTCCTGCTGCCCCCTAGTGGGAGACACCTGAACCACACAGGTTCCCTTCAACTCCGGCATTTAAAAGAGGAAGCGTTCAGTTCCCAGGAGACACAGCTGTGGCTCTTATTCACCGACTCGTCTTCCGGTCCAAGAGATTCATTTGCCACGCGGTGCCACTAGCCTGTGTGTCGAGCAACGTGCAGCCCGGGTGTGAGTTCAGTGTCTGAGCGATACACGCCCGGTCTTAATGTGTGTTGTCAAGGATCGTGTACAATATTGTTTTGGTGAACATTTTATTCTGGTGCTGATATTTGTGCTTTTCTCTGAAGGCTGCTCGGCCCTCTGGTTCACGAGGCTCTGTTGTCATCCCTTGTCTTGTCTAGAACAtcat

Function

GO: NA

KEGG:

id description
ko04650 Natural killer cell mediated cytotoxicity
ko04660 T cell receptor signaling pathway
ko04658 Th1 and Th2 cell differentiation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191799 lncRNA downstream 3722 1692749 ~ 1693555 (-) True G152320
TU191737 lncRNA downstream 81780 1567118 ~ 1615497 (-) True G152271
TU191735 lncRNA downstream 127099 1521742 ~ 1570178 (-) False G152271
TU191631 lncRNA downstream 238615 1458237 ~ 1458662 (-) True G152197
TU191612 lncRNA downstream 298885 1397341 ~ 1398392 (-) True G152178
TU191821 lncRNA upstream 38167 1745953 ~ 1752738 (-) True G152335
TU191837 lncRNA upstream 233237 1941023 ~ 1946800 (-) True G152344
TU191933 lncRNA upstream 459818 2167604 ~ 2175954 (-) True G152424
TU191973 lncRNA upstream 587047 2294833 ~ 2300752 (-) False G152452
TU191974 lncRNA upstream 587047 2294833 ~ 2318672 (-) True G152452
AMCG00005447 mRNA downstream 11817 1675244 ~ 1685460 (-) True AMCG00005447
AMCG00005446 mRNA downstream 30912 1660027 ~ 1666365 (-) True AMCG00005446
AMCG00005445 mRNA downstream 59781 1635745 ~ 1637496 (-) True AMCG00005445
AMCG00005438 mRNA downstream 122521 1570753 ~ 1574756 (-) True AMCG00005438
AMCG00005439 mRNA downstream 160409 1523660 ~ 1536868 (-) True AMCG00005439
AMCG00005461 mRNA upstream 901 1708687 ~ 1723500 (-) False AMCG00005461
AMCG00005462 mRNA upstream 47127 1754913 ~ 1774451 (-) True AMCG00005462
AMCG00005420 mRNA upstream 95131 1802917 ~ 1808080 (-) True AMCG00005420
AMCG00005421 mRNA upstream 131781 1839567 ~ 1857205 (-) True AMCG00005421
AMCG00005431 mRNA upstream 241435 1949221 ~ 1956060 (-) True AMCG00005431
TU191734 other downstream 81780 1612773 ~ 1615497 (-) False G152271
TU191743 other downstream 189649 1505940 ~ 1507628 (-) True G152277
TU191607 other downstream 325540 1371383 ~ 1371737 (-) False AMCG00005419
TU191554 other downstream 438351 1219327 ~ 1258926 (-) False G152133
TU191269 other downstream 1633549 62621 ~ 63728 (-) False AMCG00005407
TU191793 other upstream 897 1708683 ~ 1721202 (-) True AMCG00005461
TU191946 other upstream 489568 2197354 ~ 2329684 (-) False AMCG00005532
TU192197 other upstream 1167500 2875286 ~ 2876009 (-) False AMCG00005491
TU192222 other upstream 1364074 3071860 ~ 3090714 (-) False G152645
TU192573 other upstream 2580879 4288665 ~ 4289892 (-) False AMCG00005539

Expression Profile