RNA id: AMCG00005462


Basic Information

Item Value
RNA id AMCG00005462
length 678
RNA type mRNA
GC content 0.60
exon number 4
gene id AMCG00005462
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 1754913 ~ 1774451 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTTGCCTGTGCTGCTGTGCGGGGCTGTGTTTTTCCCCGGGCTCTTCTACCTCTCCCGGAGGCTGCTCGCCCGCACTTTCCGACGGTGGGACGATGCGGACGTGGTGTTGGTGAGCGAGAGACACTGGCTGGCCACCTACTTCGTCTGGTTCGCCATGCCCTATATGGCCTACGACATCTACGCTATGTACCTCAGCCACTGGTACCGCTTCCGGGTGAAAGGTCACGAGGAGTACAAGGTGCACTCGTTCCGCACCGTCAACACTTTCGTGCGAAGGGAATTTCTGCTGTTCTTCAGGAAGGATCTGGGGGACTTCTTCATCGGCTGCCTGTTCACGGCTGAGCTCAGCACTCCCTTCGTGTCTCTGGGGAAGATTCTGATCCAGCTGGGCCTACAAGACTGTGTCCTGCACAAGATCAACGGCGTGGTGGTGCTGCTCAGCTTCTTCCTCTGCCGGATTCTGCTCTTCCCCTACATGTACTGGGCGTACGGGCGGCACTACGGCATCCCTCTCTACAGCGTGCCCTTCCACCTGCCCCTCAGCTGCAACCTGGGCAACCTCTGCATCATGGCCCCCCAGGTCTACTGGTTCGTGCTCCTGTGTCGAAAGGGGTTCCGCTTGTACCAGCGCCAGGCGAAAATGCGCGACGCCGAGGGCACAGAACCCCCCAAGTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191821 lncRNA downstream 2175 1745953 ~ 1752738 (-) True G152335
TU191799 lncRNA downstream 61358 1692749 ~ 1693555 (-) True G152320
TU191737 lncRNA downstream 139416 1567118 ~ 1615497 (-) True G152271
TU191735 lncRNA downstream 184735 1521742 ~ 1570178 (-) False G152271
TU191631 lncRNA downstream 296251 1458237 ~ 1458662 (-) True G152197
TU191837 lncRNA upstream 166572 1941023 ~ 1946800 (-) True G152344
TU191933 lncRNA upstream 393153 2167604 ~ 2175954 (-) True G152424
TU191973 lncRNA upstream 520382 2294833 ~ 2300752 (-) False G152452
TU191974 lncRNA upstream 520382 2294833 ~ 2318672 (-) True G152452
TU191989 lncRNA upstream 632074 2406525 ~ 2407385 (-) False AMCG00005517
AMCG00005461 mRNA downstream 31413 1708687 ~ 1723500 (-) False AMCG00005461
AMCG00005460 mRNA downstream 47127 1697277 ~ 1707786 (-) True AMCG00005460
AMCG00005447 mRNA downstream 69453 1675244 ~ 1685460 (-) True AMCG00005447
AMCG00005446 mRNA downstream 88548 1660027 ~ 1666365 (-) True AMCG00005446
AMCG00005445 mRNA downstream 117417 1635745 ~ 1637496 (-) True AMCG00005445
AMCG00005420 mRNA upstream 28466 1802917 ~ 1808080 (-) True AMCG00005420
AMCG00005421 mRNA upstream 65116 1839567 ~ 1857205 (-) True AMCG00005421
AMCG00005431 mRNA upstream 174770 1949221 ~ 1956060 (-) True AMCG00005431
AMCG00005488 mRNA upstream 283531 2057982 ~ 2059253 (-) True AMCG00005488
AMCG00005489 mRNA upstream 295914 2070365 ~ 2073296 (-) True AMCG00005489
TU191793 other downstream 33711 1708683 ~ 1721202 (-) True AMCG00005461
TU191734 other downstream 139416 1612773 ~ 1615497 (-) False G152271
TU191743 other downstream 247285 1505940 ~ 1507628 (-) True G152277
TU191607 other downstream 383176 1371383 ~ 1371737 (-) False AMCG00005419
TU191554 other downstream 495987 1219327 ~ 1258926 (-) False G152133
TU191946 other upstream 422903 2197354 ~ 2329684 (-) False AMCG00005532
TU192197 other upstream 1100835 2875286 ~ 2876009 (-) False AMCG00005491
TU192222 other upstream 1297409 3071860 ~ 3090714 (-) False G152645
TU192573 other upstream 2514214 4288665 ~ 4289892 (-) False AMCG00005539
TU192831 other upstream 3526318 5300769 ~ 5302198 (-) True G153130

Expression Profile