RNA id: AMCG00005520


Basic Information

Item Value
RNA id AMCG00005520
length 807
RNA type mRNA
GC content 0.57
exon number 6
gene id AMCG00005520
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 2308678 ~ 2321643 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

acCTTCGGCGGCTGTAACCTGAAGCGTGTGGGGGTCATCCTGCAGAGAGGGGTGCTGATCTTGCTGCTGGCCTGCTTCCCTTGCTGGGCTCTTCTCATCAACACCGAGCCCATCCTGCTGGCTGTGAAACAGAGCCCCGAGGTGGCCAGATTGTCGCAGCTCTATGTGAAGATATTTATGCCCGCTCTTCCATTCATCTCCCAGCTTATGGTCTTTATGATAAGCTTCGTTAGCACCGTGTTTTGTGGCCATCTGGGCAAGACCGAGCTATCTGCTGTTGCGCTGGCCACTGCAGTAAGTAATCAGCCGTCTCCCTCGATCACAGTCAGCAGTGAAATAGATGATGCTTGTTCTATACGTGGCATGAAAGCACACAGCAGGGTTAAGGGGGTTAACAGGCTGTGGACAGGTTTTCTAATCTGTTTGGCGCTCCAGTCCTGCTTCTTAATCGTCTTCGTCATCAAAATGAACTGGAACAAGGCCACAGATGAGGCGCTGTTGAGAGCCGGGGTACAGAACGCACCCCACAGAAACGACGGCATGGAGAATGGCCTCGAGACCCCCAGCCCCTCACAGGacaCTTTGCAGCAGATGCAGGTGGAGGACCCCAACCCTCTGGGTGGCCACACTGACCTGGAGGGCCTGGGCGAAGGGAGACAGGCAGCAGGAACGTCTGTCAGCACTGTGGGGGAGGTGCTGCCCTTCAGGTCGCTGGTCCTGCGCCGGGGGTTGGCTCTGTGTGGTGCGCTCTTCATCCTGGCAGCCGGAGTCATCATCAACGTGGTGTTGACCAACATCCTCGGCTGA

Function

GO:

id name namespace
GO:0006855 drug transmembrane transport biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0015297 antiporter activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191973 lncRNA downstream 7926 2294833 ~ 2300752 (-) False G152452
TU191933 lncRNA downstream 132724 2167604 ~ 2175954 (-) True G152424
TU191837 lncRNA downstream 361878 1941023 ~ 1946800 (-) True G152344
TU191821 lncRNA downstream 555940 1745953 ~ 1752738 (-) True G152335
TU191799 lncRNA downstream 615123 1692749 ~ 1693555 (-) True G152320
TU191989 lncRNA upstream 84882 2406525 ~ 2407385 (-) False AMCG00005517
TU192001 lncRNA upstream 93429 2415072 ~ 2445097 (-) False G152473
TU192000 lncRNA upstream 120468 2442111 ~ 2445097 (-) True G152473
TU192221 lncRNA upstream 750217 3071860 ~ 3090714 (-) True G152645
TU192229 lncRNA upstream 838414 3160057 ~ 3160364 (-) True G152652
AMCG00005521 mRNA downstream 7824 2284444 ~ 2300854 (-) True AMCG00005521
AMCG00005532 mRNA downstream 37355 2239623 ~ 2271323 (-) True AMCG00005532
AMCG00005533 mRNA downstream 85902 2217709 ~ 2222776 (-) True AMCG00005533
AMCG00005489 mRNA downstream 235382 2070365 ~ 2073296 (-) True AMCG00005489
AMCG00005488 mRNA downstream 249425 2057982 ~ 2059253 (-) True AMCG00005488
AMCG00005519 mRNA upstream 10212 2331855 ~ 2332896 (-) True AMCG00005519
AMCG00005517 mRNA upstream 85516 2407159 ~ 2410247 (-) True AMCG00005517
AMCG00005485 mRNA upstream 263207 2584850 ~ 2585293 (-) True AMCG00005485
AMCG00005505 mRNA upstream 329269 2650912 ~ 2651547 (-) True AMCG00005505
AMCG00005478 mRNA upstream 361994 2683637 ~ 2694104 (-) True AMCG00005478
TU191793 other downstream 587476 1708683 ~ 1721202 (-) True AMCG00005461
TU191734 other downstream 693181 1612773 ~ 1615497 (-) False G152271
TU191743 other downstream 801050 1505940 ~ 1507628 (-) True G152277
TU191607 other downstream 936941 1371383 ~ 1371737 (-) False AMCG00005419
TU191554 other downstream 1049752 1219327 ~ 1258926 (-) False G152133
TU192197 other upstream 553643 2875286 ~ 2876009 (-) False AMCG00005491
TU192222 other upstream 750217 3071860 ~ 3090714 (-) False G152645
TU192573 other upstream 1967022 4288665 ~ 4289892 (-) False AMCG00005539
TU192831 other upstream 2979126 5300769 ~ 5302198 (-) True G153130
TU193087 other upstream 3759592 6081235 ~ 6082866 (-) True G153342

Expression Profile