RNA id: AMCG00005533


Basic Information

Item Value
RNA id AMCG00005533
length 1647
RNA type mRNA
GC content 0.46
exon number 6
gene id AMCG00005533
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 2217709 ~ 2222776 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

caaccacataattaaatataataattcatacCTGTTTTGTACGGAAGTACGTCATTACGCTACGTTAGGGTTAGATTTAAAGATGGCTgcttacatgttttatttggatACATGTCATTGGTAGCACTTAAAATCCTTGTGTTTAGTGAAACGTTTATTCGGAATTACAATTGTGATTGATATGTAAACGACAAATAATTAAAGCAGagttatatgttttataagcTGTCTTATGCGTCAAGGTATGTATGTGTCTTAGTGTAAAATgattttctgtatatattttcaggttttaaatGTCATGTGACAGAGGACGAGGAAAAGTCATTccaatttaataatgtatcaatAAGTAGTAAAGGTTCACTTCTGTTAAAGAGCTTACTTTGTTACCTATGGGCGTGAGTTATTAAAGTCTTGTGACCGGTATAAATAAGTGTAGGTACAGCAGTCCTGCTCAGACTGTGTCTCACTTCCCTAATCCCCATCGCACACAAAGGCAAAGTAGCGACTGTGGGAGAAATGGCCTCTTCCTTCGAGATCGGTGACACCTTCCGAGACAAGGTCCGTTTGTTGCTGGAGGAGGGGAGTTGCATCCCCGCCGACCTGCGGCTGCGGCTGGAGCAGAGCCTGGATCCGCAGCACAGGGCCGTGCCTTTCGCCGTGGCGAGACGGCTGCACGGGCTGCTTCAGGAGAGGGGCTACCCCATCTATCTCCATGAGCTCTTTGAAGACAGCAGTGTATATCTGCCAGAAATACAGATGCCTCCTAGGAATCCAGAACTCGTTGCACGTTTGGAGAGGATTAAAGCCAAGCTGGCCAATGATGAATATCGGAGGATCACCAGGAATGTCAATTGTCAGGAATTGAATCGTGCCGGAGGTTTAGCTGACATTGGAAGACAAATGCGGTCTGTGAAGGCTGTGGTGGTCACAGTCTTTAACTTCCTGGTGACGGTAGTGGCAGTCTTCGCCTGCACTTACTTGGGCAGCCAGTACATCTTCACAGAGATGGCTCCGAGGATCCTGTCTGCGGTGATCGCTGCCTCGGTCGTCGGCCTGGCGGAGCTGTACGTGCTCGTGCGGACGATGGAAGGAGAGCTGGGGGAGCTATAGCACTTCCCCAGCACTGAGGATATCGAGAGTCTCGCCGCTGGGTGCCATTTTGCTCTTAAAATCCCATGCCGAAAGGACgcttctgaaaaagaaaaaagacaaaacattacAACAGGTGCTGAGACCCAAACAGTTTTTCTATCTgcatacttgtttttttttgtctgctggAGATGAAACCCTTGCATGTCTTGATGGTGAGGGATATTCATGTCTGACCTTCCTTTTGGATCCTTAAATGTTTCGCTGTTTTTCCTTCGTGCAATGCTTCAGTATTGCACATGGTGTTCCTAATGTACATATGTTGTCCAGCGAAATAAACCTCTGATTGGAAGCTACACGTATCCATCTATTGTCCGTACAGGGTCTGGGTGAGCCGGAGCACAAGGGGCAAGGCTGGGTACAGGGTAAAGGAAGGGAATCCCCTATACCTACTGTATCACTATCATAATTAATACCTTGGTTTACTTGTCGGCATCCTCAGATGCATATCCAATTACCATTTGATTCTTAGCTTGGGGGTATTGCCAC

Function

GO: NA

KEGG:

id description
K23542 TMEM199; TMEM199 family protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191933 lncRNA downstream 41755 2167604 ~ 2175954 (-) True G152424
TU191837 lncRNA downstream 270909 1941023 ~ 1946800 (-) True G152344
TU191821 lncRNA downstream 464971 1745953 ~ 1752738 (-) True G152335
TU191799 lncRNA downstream 524154 1692749 ~ 1693555 (-) True G152320
TU191737 lncRNA downstream 602212 1567118 ~ 1615497 (-) True G152271
TU191973 lncRNA upstream 72057 2294833 ~ 2300752 (-) False G152452
TU191974 lncRNA upstream 72057 2294833 ~ 2318672 (-) True G152452
TU191989 lncRNA upstream 183749 2406525 ~ 2407385 (-) False AMCG00005517
TU192001 lncRNA upstream 192296 2415072 ~ 2445097 (-) False G152473
TU192000 lncRNA upstream 219335 2442111 ~ 2445097 (-) True G152473
AMCG00005489 mRNA downstream 144413 2070365 ~ 2073296 (-) True AMCG00005489
AMCG00005488 mRNA downstream 158456 2057982 ~ 2059253 (-) True AMCG00005488
AMCG00005431 mRNA downstream 261649 1949221 ~ 1956060 (-) True AMCG00005431
AMCG00005421 mRNA downstream 360504 1839567 ~ 1857205 (-) True AMCG00005421
AMCG00005420 mRNA downstream 409629 1802917 ~ 1808080 (-) True AMCG00005420
AMCG00005532 mRNA upstream 16847 2239623 ~ 2271323 (-) True AMCG00005532
AMCG00005521 mRNA upstream 61668 2284444 ~ 2300854 (-) True AMCG00005521
AMCG00005520 mRNA upstream 85902 2308678 ~ 2321643 (-) True AMCG00005520
AMCG00005519 mRNA upstream 109079 2331855 ~ 2332896 (-) True AMCG00005519
AMCG00005517 mRNA upstream 184383 2407159 ~ 2410247 (-) True AMCG00005517
TU191793 other downstream 496507 1708683 ~ 1721202 (-) True AMCG00005461
TU191734 other downstream 602212 1612773 ~ 1615497 (-) False G152271
TU191743 other downstream 710081 1505940 ~ 1507628 (-) True G152277
TU191607 other downstream 845972 1371383 ~ 1371737 (-) False AMCG00005419
TU191554 other downstream 958783 1219327 ~ 1258926 (-) False G152133
TU192197 other upstream 652510 2875286 ~ 2876009 (-) False AMCG00005491
TU192222 other upstream 849084 3071860 ~ 3090714 (-) False G152645
TU192573 other upstream 2065889 4288665 ~ 4289892 (-) False AMCG00005539
TU192831 other upstream 3077993 5300769 ~ 5302198 (-) True G153130
TU193087 other upstream 3858459 6081235 ~ 6082866 (-) True G153342

Expression Profile