RNA id: AMCG00005586


Basic Information

Item Value
RNA id AMCG00005586
length 1859
RNA type mRNA
GC content 0.53
exon number 4
gene id AMCG00005586
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 5249374 ~ 5268678 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCAGTTTCAGTGTAATATCTGTCATGAGAGAGTTGAATGCggacaataacacaaatattgtttcaaatcgACCCGGCTGTTGAGGGGTTAACCTACTCAACGAGCACCGCCTTGTGGACGTGGGCGGCACTGCAGCTCGGCGTGTCGGCTCCACTCGCATTGTCTCCGGGCTTCAGCGGCGCGGTGCTGCCCTCACTCCGCGGCCAGCTGCGGCACCATGAGCATCTGTGGACCGCAGGCGGGATGGGACTGAGCCCGCTGTCCTGAGCCAGCCGTGACAGAGCAGCATGTCCCGCAGCAAACGGGACCAGAGATCCAGCCCGGACGGGTTCAGGGTCCTCAGCACCGGGGAGCTGCGGGATCTCTTACAAGATGAAGACAAGATGGACCAGATCGTCAAACTCAGTgaaaagTTCCAGGAGCTGCAGGTGGAACGAGAGACCCTGTTGAGCACCAATCGCAGCCTGGCAGAGGAGAGCCTGTCCATGCGGCCGCGGCTCCAGAACGGAAAACTGCAGCTGGCCGACAGGTACCACACACTGGACAAACTGGCCGCCACCTGCAGGGACAAGCAGGACCACGTCGAGGCCTAcctgcagaaatgcagcccccaGATGGCCCAGACTCTCCTGCAGGACGAGGTGGCTCGCGCTGAGGAGGAATCCGAGGACCTCCTGGAGAAGTTCATGGAAGGCGGCCTGTCTGTGGAGCGCTTTCTGGATTCCTTCCAGAGCTCCAGAAAAGTCTGCCACATCCGTCGCGCTCAGGCCGAGAAAATCCAGGAACTGGTCAGACCAGAGCCGAGCCGCAGGAAGCCCAAGAATTTGGAGGAAGTGAAGCTCATCCCACACCCGGAGCCCCATCCGAACGGCTTCCCTGCTCAGGCCCCTCCGCGTGTGTTCCAGCTGCGCTATGGCCTGACTCCAGCATTTTTTCTGCCCCATTTCTCAATTCCCTCCAGCCAAGCTGCAAGCCTACCTCCTCTGGACTCCCAGCCAGGCCAGCTCCAGGCTTTGGGACCCAACACTCCCAACTCCTGCACTGGGCAGCCAGTAGGCCTGAGAGTGATTGGACAGATTCCTGGTTGGCCCGCCCGGCCTGTACGTTTACAGCAGCTCTACCGGCCACAGAACCACCAGCAGCCAGAACCGCCCTACCGGTAATGTCGCTGCCTGCTCTCTGGACATGTGCTCATCGTGGTCACGTTTTGCAGTGACAGTTTTGTAAAATAGCTTCCACAGAGCTCATGcaatgaaaagacaaacaaactaaatgtaagcATTGATGGTTTGCTGTTGGAATCTTTTAATGTACTGACAGACTTGAACAAACATACTTGGCAAATACCTGCAAAAAATAGGAAACTGTgcatcatgtttttatatgcaattaaaatatccGTAATGACGTGTCGATTGAATATTATCCATGTTAATATGTGGTTTGTTAAAGTCGAGGTATTGCTTAACACGTTTGCCCAAGCctatgtgtgtgttcatgcaCTAAAAGGAGCAAGTTTGGCTGGAAGTGATACAATACTGCATCCATTTGTTACAGAATGAACCATCCAAGAATGAGAACTAGACCCCGTTCTTCTTGTCCTTACTATAATTGCATTGAATGTTACAGTGTCTTTGTTCAGGCGTTTTGGATTGTAAAGTACAGCCAGGCCGTGCCAAGGCCTTCTGTACGCCACGGATAGCATATCTCCCCCTCTCGCACGCTGGCTCGGAGACGCGGTATTAAGGCACGATTGTCTACTGATGTATCTGAGAACAGGACGGGTGCTGAAGTGGtgggttttaattttattatttgtttgattttgatcAATAAATGTCCAATCATAGCATTTGTT

Function

GO: NA

KEGG:

id description
K12185 VPS37; ESCRT-I complex subunit VPS37

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU192605 lncRNA downstream 717642 4531440 ~ 4531732 (-) True G152942
TU192577 lncRNA downstream 948976 4292030 ~ 4300398 (-) True G152915
TU192551 lncRNA downstream 989062 4257221 ~ 4260312 (-) True G152894
TU192507 lncRNA downstream 1255853 3989919 ~ 3993521 (-) True G152853
TU192455 lncRNA downstream 1380165 3859796 ~ 3869209 (-) False AMCG00005560
TU192843 lncRNA upstream 82675 5351353 ~ 5352345 (-) True G153141
TU192845 lncRNA upstream 84675 5353353 ~ 5355697 (-) True G153143
TU192894 lncRNA upstream 218631 5487309 ~ 5489599 (-) True G153178
TU192961 lncRNA upstream 379680 5648358 ~ 5648709 (-) True G153236
TU192977 lncRNA upstream 472814 5741492 ~ 5748572 (-) True G153248
AMCG00005587 mRNA downstream 5052 5241801 ~ 5244322 (-) True AMCG00005587
AMCG00005588 mRNA downstream 42793 5195219 ~ 5206581 (-) True AMCG00005588
AMCG00005572 mRNA downstream 77759 5170773 ~ 5171615 (-) True AMCG00005572
AMCG00005573 mRNA downstream 87514 5158837 ~ 5161860 (-) True AMCG00005573
AMCG00005582 mRNA downstream 163575 5082357 ~ 5085799 (-) True AMCG00005582
AMCG00005619 mRNA upstream 14898 5283576 ~ 5296553 (-) True AMCG00005619
AMCG00005618 mRNA upstream 37910 5306588 ~ 5309932 (-) True AMCG00005618
AMCG00005617 mRNA upstream 41981 5310659 ~ 5312974 (-) True AMCG00005617
AMCG00005620 mRNA upstream 49220 5317898 ~ 5337528 (-) True AMCG00005620
AMCG00005616 mRNA upstream 75831 5344509 ~ 5348268 (-) True AMCG00005616
TU192573 other downstream 959482 4288665 ~ 4289892 (-) False AMCG00005539
TU192222 other downstream 2158660 3071860 ~ 3090714 (-) False G152645
TU192197 other downstream 2373365 2875286 ~ 2876009 (-) False AMCG00005491
TU191946 other downstream 2919690 2197354 ~ 2329684 (-) False AMCG00005532
TU191793 other downstream 3528172 1708683 ~ 1721202 (-) True AMCG00005461
TU192831 other upstream 32091 5300769 ~ 5302198 (-) True G153130
TU193087 other upstream 812557 6081235 ~ 6082866 (-) True G153342
TU193235 other upstream 1221577 6490255 ~ 6496571 (-) True AMCG00005674
TU193605 other upstream 2516876 7785554 ~ 7788321 (-) True G153733
TU193670 other upstream 2730658 7999336 ~ 8001340 (-) False AMCG00005704

Expression Profile