RNA id: TU192961


Basic Information

Item Value
RNA id TU192961
length 352
lncRNA type inter_gene
GC content 0.51
exon number 1
gene id G153236
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 5648358 ~ 5648709 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACCCAATGATGTACGCCAGCACAGCGAGCTGGATCAGCCGGCACACTATCCCCACTCTCTTGTTCTTGACCAGAACTTGGCGAGGGGTCTCGTACTCAAAGAGAAAGTCAGAGATGGCTTCCTTCAGGAATTTGTTCATCTTACACTGCCTTCGCCTCCTGCTTCCTGAAcaactcactctctctcacactcgcCCCTGACTCATTCATGCACGGCTAAGTGTTACAGTAAGAAAACCCAGAAGtgattgttctctctctctctctctctgtctctctctctctctcacacacacacacacacacacaccgagtGACCTGAATGGGGTGGAGTTTATGGACTCCGCAAACAC

Function

GO:

id name namespace
GO:0072329 monocarboxylic acid catabolic process biological_process
GO:0017001 antibiotic catabolic process biological_process
GO:0019541 propionate metabolic process biological_process
GO:0019543 propionate catabolic process biological_process
GO:0009062 fatty acid catabolic process biological_process
GO:0019626 short-chain fatty acid catabolic process biological_process
GO:0046459 short-chain fatty acid metabolic process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU192894 lncRNA downstream 158759 5487309 ~ 5489599 (-) True G153178
TU192845 lncRNA downstream 292661 5353353 ~ 5355697 (-) True G153143
TU192843 lncRNA downstream 296013 5351353 ~ 5352345 (-) True G153141
TU192605 lncRNA downstream 1116626 4531440 ~ 4531732 (-) True G152942
TU192577 lncRNA downstream 1347960 4292030 ~ 4300398 (-) True G152915
TU192977 lncRNA upstream 92783 5741492 ~ 5748572 (-) True G153248
TU193002 lncRNA upstream 151939 5800648 ~ 5800906 (-) True G153272
TU193058 lncRNA upstream 399421 6048130 ~ 6048470 (-) True G153313
TU193069 lncRNA upstream 420078 6068787 ~ 6069014 (-) True G153324
TU193123 lncRNA upstream 583457 6232166 ~ 6234028 (-) True AMCG00005628
AMCG00005625 mRNA downstream 134964 5508252 ~ 5513394 (-) True AMCG00005625
AMCG00005575 mRNA downstream 180522 5460919 ~ 5467836 (-) True AMCG00005575
AMCG00005576 mRNA downstream 203748 5444161 ~ 5444610 (-) True AMCG00005576
AMCG00005574 mRNA downstream 242459 5372461 ~ 5405899 (-) True AMCG00005574
AMCG00005616 mRNA downstream 300090 5344509 ~ 5348268 (-) True AMCG00005616
AMCG00005606 mRNA upstream 18151 5666860 ~ 5709455 (-) True AMCG00005606
AMCG00005605 mRNA upstream 100067 5748776 ~ 5751438 (-) True AMCG00005605
AMCG00005610 mRNA upstream 271491 5920200 ~ 5931156 (-) True AMCG00005610
AMCG00005611 mRNA upstream 288106 5936815 ~ 5947317 (-) True AMCG00005611
AMCG00005601 mRNA upstream 421483 6070192 ~ 6072666 (-) True AMCG00005601
TU192831 other downstream 346160 5300769 ~ 5302198 (-) True G153130
TU192573 other downstream 1358466 4288665 ~ 4289892 (-) False AMCG00005539
TU192222 other downstream 2557644 3071860 ~ 3090714 (-) False G152645
TU192197 other downstream 2772349 2875286 ~ 2876009 (-) False AMCG00005491
TU191946 other downstream 3318674 2197354 ~ 2329684 (-) False AMCG00005532
TU193087 other upstream 432526 6081235 ~ 6082866 (-) True G153342
TU193235 other upstream 841546 6490255 ~ 6496571 (-) True AMCG00005674
TU193605 other upstream 2136845 7785554 ~ 7788321 (-) True G153733
TU193670 other upstream 2350627 7999336 ~ 8001340 (-) False AMCG00005704
TU193709 other upstream 2443039 8091748 ~ 8124685 (-) True G153806

Expression Profile