RNA id: AMCG00006415


Basic Information

Item Value
RNA id AMCG00006415
length 1960
RNA type mRNA
GC content 0.54
exon number 14
gene id AMCG00006415
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 4168050 ~ 4177052 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGCAGcaggaaggtggtcagggaccgGCAGTGAGAAGCTCCTTCCGCAAATTAGGGATGAGGGCGGAGAGGCAGCCGGGGGACAGCGACTCTAATGACGGTCTGGAGGGAGTGGAAGAGGAGAGGCGAGGCTGTATAGCTGGGTGCACTGGTTGGCAGTACTACAACTAATAATGTCCAGATGTTAAACAAGTCATCGCAGGGCTGCTGTGGTCAGAGCACACCCAGGCTGCGCTCCTCCTCTCGGCGCATCTCCGCTGCGGACTCCGTGCGACGCCGacAAGAAGATACTGTATCCAGCCATGGGTAATTCTCCAAGTATACCAGAAAGAAGCACGTCCATTCAGTTTTTACTGCAGGAGGAGCAGGACAACTACCTCCGAGCCGAGCCGCAGTGCTCGATCTGCCTGGGGGTCTTCACGGACCCGGTGACCATCGAGTGCGGCCACCACTTCTGTCGTGCTTGTATCGTCACCTTCTGGGTGGATCGCGAGTTGACCTGCCCTCAGTGCCGATGGCTGTGCGACAGGGAGAAAACAGTCAGTAAACAAGATatccCTTTCGATTGCGACACTCCGGGTCAGCCGCTACAGCTGGTCGGATTTAACGACATCTCCGGTTCTATGCAGCTTCATGAGGATGTCTTGCAAACTTGTTTCCTGAGGCCCGATGTGAAGGACACCCCCGTCTGTGTGGTGTCGGTTATTGGCGAGCGACGAAAGGGCAAATCGTTTCTGCTCAACTACATTTTACGCAAGCTGTCCAAAATGGAACACGTCAACGGCTCTTGGATGGGCGAGGACGAGCCACTGGAGGGATTTGAATGGCGTCCGGGCGCTGACAGCACCACCAAGGGCATCTACATCTGGAGCAGGCCCCTGTTTGTGGAAAGACTGGAGGGAAATATCGCGGTTTTCCTGGTGGACACGGAAGGCTCGGTGGACATCCTGCGGGATTCAGAAGTCAGTGTGAAGTTATCGGCGCTGAGCGTTTTTCTCAGCTCTCATCTGATATTTAATGTTCATACTAACATTAAGAAAACAGACCTGGACTACCTTGAgATGCTCTATCTTATGGCTGAAAATGGGAAAAATGCCTTTGATTTCAAACAATTCCAGGGGTTTGATTTTCTTGTGCGAGACTGGACTTACACAATGGACCTGGGACATGCTGAAGGTGCAAGACAGCTGGAGATAATAATCCAGcaACTGGAAACATCCAAAACGAACCCTAAAGCTCTGAGTATCCTGAAAGAGGAGAATCCCCAATGTTACTTAATGCCATTCCCTGGGAGGAGGATGCTCAAGAGTGAACAGGGGACTGTGCAAGaTATGGATGAAGAATTTCGGGACTGCCTGAGGGAGTATGTGGACCACATTGCTGAAAGCCTAGAGACATCCCAATCCTCAGTAACCGGGGGGACATTAGCAGAGAAATTCAAGATTGTGGCCGACAGCATCCTTAATAGCAAGTACAGGATTTCCAATCAGCTGGAGttattaGATGCCATAATCACCACACAGGCAGAACAGGAGTTTAAAACGTTCTTAGAAGAGCAAAACAAGGTCATGCTGGACCCCCCTAAGAAAATGAAAGCCCGGGTGGAAGTGAAGACGGCGGAGCTGTGCGAGCGCCTGCGGGAAGAGGTCAACAAGCAGGCACTGGAGGACTTCGAGACCTGGGTCCTCGGCCAGCAGGAGGAGTTCCTGAAGATCTACGACATCAAGTTCGGCATAGTGGTGGCCTGCATGGTGACGGTGCCGGTGCTGTCGCTGGCCGGGGGCGTGGCCGGGGGGGTGATTGCGGGGGGGGCGGTGGCGGCGGAGGCGGGGGTGATCGCGGCCGGGACGGCGATCGGCACCACAgccggggtgggggtggggtcgGTGGCCACGGCAGTGGCTACTGCCATGTATAAGAGAATCAAGAGTTTCAAGGAGAGAGACCACAGTGGGGAATAG

Function

GO: NA

KEGG:

id description
K25173 RNF112; E3 ubiquitin-protein ligase RNF112

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137279 lncRNA downstream 1798 4166951 ~ 4167239 (-) True G109635
TU137278 lncRNA downstream 2448 4166328 ~ 4166589 (-) True G109634
TU137276 lncRNA downstream 4480 4163982 ~ 4164557 (-) True G109632
TU137273 lncRNA downstream 15456 4152911 ~ 4153581 (-) False AMCG00006414
TU137272 lncRNA downstream 29768 4139034 ~ 4139269 (-) True G109628
TU137257 lncRNA upstream 89775 4266827 ~ 4268470 (-) True G109616
TU137298 lncRNA upstream 98277 4275329 ~ 4276386 (-) False AMCG00006429
TU137341 lncRNA upstream 131121 4308173 ~ 4311951 (-) True G109689
TU137350 lncRNA upstream 167335 4344387 ~ 4349812 (-) True G109692
TU137406 lncRNA upstream 337258 4514310 ~ 4515575 (-) True G109735
AMCG00006414 mRNA downstream 10914 4152816 ~ 4158123 (-) True AMCG00006414
AMCG00006421 mRNA downstream 27403 4134610 ~ 4141634 (-) True AMCG00006421
AMCG00006422 mRNA downstream 36290 4131968 ~ 4132747 (-) True AMCG00006422
AMCG00006418 mRNA downstream 38180 4125812 ~ 4130857 (-) True AMCG00006418
AMCG00006417 mRNA downstream 45400 4109975 ~ 4123637 (-) True AMCG00006417
AMCG00006431 mRNA upstream 12797 4189849 ~ 4193150 (-) True AMCG00006431
AMCG00006425 mRNA upstream 18268 4195320 ~ 4197795 (-) True AMCG00006425
AMCG00006426 mRNA upstream 23709 4200761 ~ 4217871 (-) True AMCG00006426
AMCG00006430 mRNA upstream 45026 4222078 ~ 4230525 (-) True AMCG00006430
AMCG00006427 mRNA upstream 56612 4233664 ~ 4242559 (-) True AMCG00006427
TU137277 other downstream 3437 4164934 ~ 4165600 (-) True G109633
TU136502 other downstream 1839046 2324131 ~ 2329991 (-) True AMCG00006328
TU136304 other downstream 2038782 2097818 ~ 2130255 (-) False G108938
TU136306 other downstream 2144894 2020001 ~ 2024143 (-) True AMCG00006313
TU136165 other downstream 2287200 1881282 ~ 1881837 (-) True G108829
TU137807 other upstream 1837052 6014104 ~ 6016943 (-) False AMCG00006491
TU137903 other upstream 2608261 6785313 ~ 6785851 (-) True G110140
TU137983 other upstream 2901337 7078389 ~ 7088985 (-) True G110195
TU138386 other upstream 4545336 8722388 ~ 8724352 (-) True G110507
TU138401 other upstream 4610766 8787818 ~ 8794062 (-) True G110520

Expression Profile