RNA id: AMCG00006416


Basic Information

Item Value
RNA id AMCG00006416
length 1859
RNA type mRNA
GC content 0.57
exon number 19
gene id AMCG00006416
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 4099447 ~ 4108705 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGGAACCTCGCTCAACGTGACCACTGACATTTTAGGTTTCGCGTTTCATGCCTTTGACCGGATACACTCGGAGCCACCCGATGCTGTGCTTTCGTTCCCTCCCCGCTTGCCGTACTTAGTCACCCAGGAAGAATGGCCGGCGCGATGGTGCAGCTATGGTGGCGTTGTGTATTCGGGCCCAAATTGAGCAGGATTCACCGGAGCGCCGAGCCAAGCCGAGCGGGTCCAGTGAGGCAACAGGGATGGACCTATCAGGCCAAGGCCCTTGAGAAGCACACAGACAGCATCCTCGGCTGGGCATCTGCTCTGTGGTCTCTCTCTTACTACACGTCTCCCCTGCTTGTGTTCTACCTCTACAGGAAAGGGTACATCTGCAGCTCCAAGCTGGTGCCGGTGGGGCAGTATGTCGGCACTCTTCTGATCGTCCTTGTGGGAGTTGCGTGTCTGAGGGGAATCGGACGATGGACCAATCCAGAGTACATCCAGTTCATCAcaatcctggaagagaccaagAGAAACAACCGGTCTGAGAACAAGAAAAAGTTGGCCTGCTTTAACTTCGATTTCCGCAGTTGGCCGGTGGACTTCAACTGGAGTGACGTGAGCAGCAGGAAGGAGCTGACCAAGGGAGGCGTCTCCCTGCTGAAGTCGGAGCCCAAACACAGAGGCGCTGCAGACAGCCTCCTGAGCTCAGTGCGCAAACTGCCCTGCCAGCTCGTCAGTTACCTGATCGCCCACTCCTTCGGGCGCCGCATGCTGTACCCGGGCTCCGTGTGTCTCCTGCAGAAGGCCATGAGGCCCATGCTGCAGCAGGGCCAAGCCCGGCTCGTCGAAGAGTTCGATGGAGAGCGGGCCAAGCTGGTGGCCTGCGATGGGAACGAGATTGACACCATGTTTGTGGACCGAAGGATGGGAGCTGGGGAGCAGGGGCACACGCTGGTGATCTGCTGCGAAGGCAACGCGGGCTTCTATGAGGTCGGCTGCATGAACACACCACTGGAAGGGGGCTACTCCGTGCTGGGCTGGAATCACCCTGGCTTTGGCGGCAGCACGGGAGTGCCGTTCCCCCAGAACGAAGCCAACGCCATGGACGTGGTGGTCCAGTACGCCATCCACAGGCTGGGCTTCAAGCTGGACGACATCATCATCTACGCCTGGTCTATCGGTGGCTTCACAGCCACTTGGGCCGCCATGTCCTACCCAGACATCCGCGCTCTGGTCCTGGACGCCTCCTTCGATGACCTCCTGCCCCTCGCCCTCAAAGTCATGCCCGAGAGCTGGAGGTCCTTGGTCACCCGGACAGTGAGGCAGTATATGAACCTGAACAACGCAGATCAGCTGTGCAAGTACCAGGGTCCGGTCCTGTTGATCCGCAGAACGAAGGACGAGATCATCACCACCTCAGGCCCTGAGGACATCATGTCAAACCGGGGCAATGACTTGCTGTTGAGGCTCCTGCAGTTCAGATACCCCAAGGTGATGACCGAGGACGGGATACGTGCGGTGAGAGAGTGGCTGGGGGCCGGCACCAACATCGAAGAAGGTGAGGACATGACTTCGGAAGGACGGAGACAGCTGGCTCTGTTCCTGgcCCGGAAGTACATGAGGAACTTCGACACCACGCACTGCACTCCGCTGCCCTACGCAGAGTTCCACTCGCCATGGAGATTATAGCGCGACGGATGGAccggggttgggggggggagaAGGTGGCAATACAGAACTTGAAGCATCCTGGGTGTTTTCTGTCGTCTGCTCAGCTGCTCCCCTAGTCTGTAacgtatatctatatatgtataaaacaaaaccttttttttttttttttttttttctgtaactgcTTTCGAGAGGGTGAGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137260 lncRNA downstream 15995 4081807 ~ 4083452 (-) True G109619
TU137245 lncRNA downstream 64116 3976709 ~ 4035331 (-) True G109609
TU137158 lncRNA downstream 122830 3976203 ~ 3976617 (-) True G109540
TU137130 lncRNA downstream 232406 3866720 ~ 3867041 (-) True G109514
TU137095 lncRNA downstream 265024 3826510 ~ 3834423 (-) True G109483
TU137272 lncRNA upstream 30329 4139034 ~ 4139269 (-) True G109628
TU137273 lncRNA upstream 44206 4152911 ~ 4153581 (-) False AMCG00006414
TU137276 lncRNA upstream 55277 4163982 ~ 4164557 (-) True G109632
TU137278 lncRNA upstream 57623 4166328 ~ 4166589 (-) True G109634
TU137279 lncRNA upstream 58246 4166951 ~ 4167239 (-) True G109635
AMCG00006419 mRNA downstream 9315 4089300 ~ 4090132 (-) True AMCG00006419
AMCG00006405 mRNA downstream 33304 4058758 ~ 4066143 (-) True AMCG00006405
AMCG00006406 mRNA downstream 43202 4050226 ~ 4056245 (-) True AMCG00006406
AMCG00006407 mRNA downstream 56220 4040494 ~ 4043227 (-) True AMCG00006407
AMCG00006402 mRNA downstream 221405 3873950 ~ 3878042 (-) True AMCG00006402
AMCG00006417 mRNA upstream 1270 4109975 ~ 4123637 (-) True AMCG00006417
AMCG00006418 mRNA upstream 17107 4125812 ~ 4130857 (-) True AMCG00006418
AMCG00006422 mRNA upstream 23263 4131968 ~ 4132747 (-) True AMCG00006422
AMCG00006421 mRNA upstream 25905 4134610 ~ 4141634 (-) True AMCG00006421
AMCG00006414 mRNA upstream 44111 4152816 ~ 4158123 (-) True AMCG00006414
TU136502 other downstream 1769456 2324131 ~ 2329991 (-) True AMCG00006328
TU136304 other downstream 1969192 2097818 ~ 2130255 (-) False G108938
TU136306 other downstream 2075304 2020001 ~ 2024143 (-) True AMCG00006313
TU136165 other downstream 2217610 1881282 ~ 1881837 (-) True G108829
TU136131 other downstream 2374599 1722561 ~ 1724848 (-) True AMCG00006298
TU137277 other upstream 56229 4164934 ~ 4165600 (-) True G109633
TU137807 other upstream 1905399 6014104 ~ 6016943 (-) False AMCG00006491
TU137903 other upstream 2676608 6785313 ~ 6785851 (-) True G110140
TU137983 other upstream 2969684 7078389 ~ 7088985 (-) True G110195
TU138386 other upstream 4613683 8722388 ~ 8724352 (-) True G110507

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00020562 True 2174 mRNA 0.49 20 NC_007127.7 10477533 ~ 10516970 (-)