RNA id: AMCG00006422


Basic Information

Item Value
RNA id AMCG00006422
length 780
RNA type mRNA
GC content 0.56
exon number 1
gene id AMCG00006422
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 4131968 ~ 4132747 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCTGCTGTGCCTGAACACGGCGGTGTGGGTTCTAGATAGTGGTATCAACAATTTTTGCCAATACCCTGGCATCGCCTTCATGGTCTTGTTTAACCAATTTCTGACCGTGTGCACCAGCATCTGGTACAACGCCTTGCTCTGCCTCTATTACTGCCTCAAGATCCTCCCTGCAAAGACAGGCTGCTTCAGGGCCATCAAATCCCATCTCTCCCACTTGGTGCGCTGGGCGTTGTTGATCATCTTCTTCCTCTGCTTCGGCATGTCTTGGAACTCGCTTCTGAAGGGCCACTGCCGGCCCCAAAACCTCACCAACTCCACAGAGCTCCTGGCGACATATGAAAGTACAGTCAAACAGGAGGATCTTATCTTTacggttgtgtgtgttttaatcgGCTTGGTGCTGCCCTTCACAGTCATGATGGCCTCCTGCGTGGCCATCCTCCGCCACCTGCGGGCCCACATCCGCCGCATGAAGAGCGGCTGTAGCGAGTTCTCCTCATCGCCACGTCTGGACAGCGAGCGGAGGGTGATGCGCTTGATGTCCTGCCAGGTGCTGCTGTACAGCGTCTCCCTCATCCTGTACACCTGGATGATCTATTCCGGCGACACTGTGTCACAGTGTTGGTTCTACTCCACCATGCCCCTGACCCTGTTCTGCTTGACCACGTCCGTCAACTTTCTGCTCCTCAATCCCAACCTGCGCCAGAGTGCCACCTACCTGGGCCGCCGGGCTCTCTGTCAGGATGCCCCCAATCAACTGGGCGAAGACCCCGAATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137260 lncRNA downstream 48516 4081807 ~ 4083452 (-) True G109619
TU137245 lncRNA downstream 96637 3976709 ~ 4035331 (-) True G109609
TU137158 lncRNA downstream 155351 3976203 ~ 3976617 (-) True G109540
TU137130 lncRNA downstream 264927 3866720 ~ 3867041 (-) True G109514
TU137095 lncRNA downstream 297545 3826510 ~ 3834423 (-) True G109483
TU137272 lncRNA upstream 6287 4139034 ~ 4139269 (-) True G109628
TU137273 lncRNA upstream 20164 4152911 ~ 4153581 (-) False AMCG00006414
TU137276 lncRNA upstream 31235 4163982 ~ 4164557 (-) True G109632
TU137278 lncRNA upstream 33581 4166328 ~ 4166589 (-) True G109634
TU137279 lncRNA upstream 34204 4166951 ~ 4167239 (-) True G109635
AMCG00006418 mRNA downstream 1111 4125812 ~ 4130857 (-) True AMCG00006418
AMCG00006417 mRNA downstream 8331 4109975 ~ 4123637 (-) True AMCG00006417
AMCG00006416 mRNA downstream 23263 4099447 ~ 4108705 (-) True AMCG00006416
AMCG00006419 mRNA downstream 41836 4089300 ~ 4090132 (-) True AMCG00006419
AMCG00006405 mRNA downstream 65825 4058758 ~ 4066143 (-) True AMCG00006405
AMCG00006421 mRNA upstream 1863 4134610 ~ 4141634 (-) True AMCG00006421
AMCG00006414 mRNA upstream 20069 4152816 ~ 4158123 (-) True AMCG00006414
AMCG00006415 mRNA upstream 36290 4169037 ~ 4177052 (-) True AMCG00006415
AMCG00006431 mRNA upstream 57102 4189849 ~ 4193150 (-) True AMCG00006431
AMCG00006425 mRNA upstream 62573 4195320 ~ 4197795 (-) True AMCG00006425
TU136502 other downstream 1801977 2324131 ~ 2329991 (-) True AMCG00006328
TU136304 other downstream 2001713 2097818 ~ 2130255 (-) False G108938
TU136306 other downstream 2107825 2020001 ~ 2024143 (-) True AMCG00006313
TU136165 other downstream 2250131 1881282 ~ 1881837 (-) True G108829
TU136131 other downstream 2407120 1722561 ~ 1724848 (-) True AMCG00006298
TU137277 other upstream 32187 4164934 ~ 4165600 (-) True G109633
TU137807 other upstream 1881357 6014104 ~ 6016943 (-) False AMCG00006491
TU137903 other upstream 2652566 6785313 ~ 6785851 (-) True G110140
TU137983 other upstream 2945642 7078389 ~ 7088985 (-) True G110195
TU138386 other upstream 4589641 8722388 ~ 8724352 (-) True G110507

Expression Profile