RNA id: AMCG00007217


Basic Information

Item Value
RNA id AMCG00007217
length 3711
RNA type mRNA
GC content 0.49
exon number 19
gene id AMCG00007217
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 7680455 ~ 7696605 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCAGTCGAAGAAGAGGACGGGCCGAGCTCTGCCCAGGGAGAGAGTGACAGCCCCCGTGACCCACCCTTTCCGGTCGTCTCCAGCCCAGCTCGGAGCCCCTGCCTTCACCCCAGACCCAAGCCCAGGCCCTGCCAGCCCCCAGCCATGCCCACCCTCcccgaggaagaggaggactCCCCAGAGGAGTTAGACAGCTCCTCCAGCTCTCCAGTCTCTTGTACTCCTGTTGACAACAGACTGGTGAATGTAACTGCACCCTCCATCATTTTCCCAAGACAAGCCGACCAAATGGACCAAGACAGCAAACCGCTCGAACAGACCAGACCGCACAGCCCCAGGCCTCGACTCTCACGGAGCTCGTTCTCTTCAGGGAACCCAATCACCACAGTCGACTACACAGGCCATGTGATTGACCTGGTAAAAGACCAGCTGCCAGATGTCGAGATATCTGATGACGATAAGAAGAAGAATCTGGAGCTGCTGGAGGAAGCAAAGAAAGTCAGTGAGCGCTTCCTGACTCGAAGGGGTCGAAGGTCAACTTGCAGCCTGTCAGACTCCCCGACAGCTCTTTCACCAAATCCCACTCCTCGGTCTTCTCCTGTACCATCAAGAAGCAGCTCCATTACTGTGCCCCCTCAGATCGCTCCGGATGGAAGCGAGGTTAATTATATCACTCCAACCACAACTCAGCATCTGGAGGTGCCCAGTGTCAGAGAGCCAGCAGACGTGATGGGACAGGAGCCGGAGCAGAGCCCCAGAAGACAGGGCGATCGAAAGAACAACGAGAAGCGCAAGGTGTCGCAGGGAACGCTGTCTCCTCGCCACAGCGCCTACGGGAGTCCCAGGGAAGCGTCTCTGGAGcagaaagaaaactgtgacGCACGGCTTGGTGGCGATATGAGGAAGAAGGCCCCGTCGCCTGTGGGCAGAAGGGTGGACGAGGGCCCTGAGGAGGGCTCTGTGAGGAAAAGCCTGGAGGGAGATCACTCTGCCAGGGGGGGCTCCTCTCCCAGTGGCGGGGTGTCCATCTCCAAGGCAGCTGCTCAGGCTCTCCCCCCTGGGGCCTGCACGGCCGAACTGAAGTCCTTTGGCTGTGGCCCTCCCCTCATGAGGGCAGTGTCATGGGATGCTGTGGGGCCCGCCACTGTCCGAAATGGGGCACAGAGCTTTCCAGGCAAGAATGACGAatccttttcattttatgacAAATCCAATAGCGCGCTCCTGAAGTCTACTGGTTACAAGGATTTTCCCGTTCAGCCAGTCAAAGTGCAGAAACTGAGCAAACTGCGTGAGGAAAACAAGCTGATGCGGAACCAGAGCATCGTTGGATCAAAGCTGCCGGATCTCAGTGAAACAGCTGAACAGGAAAAAGGGACCTCTTCCAATACCACTCCAGCATTAGCTACAGAGGAGGAGACCAAAGGCACCTCGGATGTAATGCCTAACATTTCAGACATCATGCTGCGCAAACTCAAACTGCACCGCTCTCTGCCTGGCAGTGCACCTCCCCTCACAGAAAAAGAAGTTGAGACTGCATTCATCCAGCTTTCCTTGGCCTTCCGCAATGACAGTTATACTCTGGAGACGAGGCTGCGTCaagccgagagagagagaaacatgacTGAAGAGAACACAGAGAAAGAACTGGATGATTTTAAAGGGTTTATGAAGGCTGAAAATGCGGCTGTTCGGCAGGGCTCTGCTCTGCTGTGGCAGAACTATGAGCAGAGGGAGGCGTACCAGCGCCTCCTGGAGACAGTGGCGGTACTGCATCGCCTGGCAGTGCGTCTCTCCAGCCGAGCAGAAATGGTGGGAGCTGTGCGGCAGGAAAAGCGTATGAACAAAGCCACTGAAGTGATGATGCAGTATGTAGAGAATTTGAAGAGGACTTACGAGAAGGACCACGCCGAGCTCGTCGAGTTCAAAAAGCTTGCCAACCAGAACTCCAATCGCTGTTACGGTGGCTCCATCGATGCTGGAGATGATGGTATCCCCCGTGCATCGAGATCTATGTCTCTAACCCTAGGAAAGGCTCTGCCTCGACGAAGGGTCAGTGTGGCGGTGGTTCCCAAATTCAACTTGTTAAACATCCCAGGTCAATCCCCCACCTCTATAGGCCCTGGACTACCTGTGCTGTGTGAGGCAAACAGTGGAAAATGCAGTTCCCCCACAGAATCTCCACCAGCACCAATAATGGAGAATGGAAAAGCGAGTGCAGACCAGGAAAATGAGACATCGTCCCCAGCCCCGCCTCCCGGCAACCTAGATGAGATCAGATCTGAGATTAAGGCCAAAATCGAGGAGGATGCATACAATAAAGGCAAGTACGAGGAAGCTCTGAACGTCGTGAGCAGGCTGTGTCCAAAGATTTTACGACAGAATCGCCTGTTCTGGATTATCGCAGCCTCTGCTGTGTTTTTGGCTTTCATCGTCAGTGTCTTTTCATCCTTGAGTAATTCTTACAGCGAACTGGGGGAAGGATCGTCAAGCAAGAGTGCATACTCAGGCAAAAAGCAGAACTTTGGCTGGAATGTCGGGCTGCAGCCTAAGAAACCCACAGCGGAGTAAAACAGAGCATTTCCTCTCACACGCTGGCATAAAACAGACTTGTCCTCCAATGACAGCCTGCTGTGAAGGACTGTCTCGACCATCACAACACAAAGACCACCTGAATATGAACAATTTATGGCAAAGGAGAAGAAACATTCAGGGGCTGTGGACAATCACTTTGCAAGCTTTAATTATACACCCAGATTATTATGTCAACTAAAAAATAGAAACACCGCCAAGGTAGCCAAAGGGACtacaaaaataatgtcatgAAGATAATACTATTGACATGTCGATTAATCGCTCGAGATCTTTGGTTCAAATGAATGTGTAAATCTCTGCTCTTTTTTCAGGTAAATCTGCAGCCTTATTTTAGTCCATGAAAACGATGGGCTGTGCTATCATGGTCTGTGGTTAACTGTATAGGCGATTGCGTGACAGACTTTGATGGAAGTAATGTAATGCTTGACAGGGAGGAACCACACATCTGTCTTCTCAGGTTAGATAAAGCAATGCTGGTCCCACACAGCAATGTATTGAAGTAttcaaaaaacaatcaaagaggttagtttttaattttgttaggTAAAATATtctatattgtgtatttaaaaagagaCCTAGATTGAAGATAACTGCAATGTAGTTTATAAAGTGCAATATTTTTGTAGCAGATGTCCACAAATAGGTTTTGTCCATTTGGTTTTTACTTTCACGGCACTGAGCACCGTCGGTAAGACGGGTCTCCAGATATAAAGGAGCACTATTTTTGAACCGCATgagagcattattttatttatcattgtaAACATCTGCACATGTGTGCTAGCCTTGTACTGTATAGTGCCACCATACTTGATTCTTGAAATAAACCTGCCTTATCACATCTCTTGCAACCGGATTCACTTGGGTGTTTCTGTGGCCAGGAAGTCCTGCATTTCTGGATTCCTTTTTTGTGACTTCctgcagtgaaaaaaaaagattctgcTTTTTCTAAAATGATGCATAAGTGCAAAGAAAGATTTATTTGCACATAtatttccaaactgttacaaCATCcttccatgtttttattttatttattgtattcaataaATCACTAAAGAAAGCTAAAACACAGCTTCTGTGATATAAAAAGGACATTATCTGGAAGTTGGg

Function

GO: NA

KEGG:

id description
K12337 MRVI1, IRAG; inositol 1,4,5-triphosphate receptor-associated cGMP kinase substrate

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU27601 lncRNA upstream 4578 7669719 ~ 7675877 (+) True G22027
TU27550 lncRNA upstream 73384 7606579 ~ 7607071 (+) True G21985
TU27508 lncRNA upstream 148685 7531563 ~ 7531770 (+) True G21949
TU27480 lncRNA upstream 183356 7496693 ~ 7497099 (+) True G21924
TU27457 lncRNA upstream 213230 7412617 ~ 7467225 (+) True G21902
TU27621 lncRNA downstream 8543 7705148 ~ 7705359 (+) True G22038
TU27671 lncRNA downstream 204174 7900779 ~ 7901175 (+) True G22076
TU27779 lncRNA downstream 484067 8180672 ~ 8183421 (+) False AMCG00007232
TU27780 lncRNA downstream 484067 8180672 ~ 8183421 (+) False AMCG00007232
TU27781 lncRNA downstream 484067 8180672 ~ 8183421 (+) False AMCG00007232
AMCG00007218 mRNA upstream 21218 7657532 ~ 7659237 (+) True AMCG00007218
AMCG00007216 mRNA upstream 30424 7640451 ~ 7650031 (+) True AMCG00007216
AMCG00007208 mRNA upstream 133761 7535567 ~ 7546694 (+) True AMCG00007208
AMCG00007209 mRNA upstream 166483 7513065 ~ 7513972 (+) True AMCG00007209
AMCG00007203 mRNA upstream 275638 7398093 ~ 7404817 (+) True AMCG00007203
AMCG00007220 mRNA downstream 5654 7702259 ~ 7704843 (+) True AMCG00007220
AMCG00007219 mRNA downstream 11654 7708259 ~ 7710289 (+) True AMCG00007219
AMCG00007223 mRNA downstream 142213 7838818 ~ 7844361 (+) True AMCG00007223
AMCG00007225 mRNA downstream 168773 7865378 ~ 7887173 (+) True AMCG00007225
AMCG00007224 mRNA downstream 275671 7972276 ~ 7984466 (+) True AMCG00007224
TU27445 other upstream 301509 7374323 ~ 7378946 (+) True G21891
TU26964 other upstream 2100161 5565941 ~ 5580294 (+) False AMCG00007148
TU26961 other upstream 2110376 5565941 ~ 5570079 (+) False AMCG00007148
TU26962 other upstream 2110376 5565941 ~ 5570079 (+) False AMCG00007148
TU26956 other upstream 2118301 5558805 ~ 5562154 (+) True AMCG00007147
TU27825 other downstream 670831 8367436 ~ 8396242 (+) True AMCG00007243
TU27900 other downstream 1008052 8704657 ~ 8711311 (+) True AMCG00007253
TU28037 other downstream 1739919 9436524 ~ 9499728 (+) True G22372
TU28420 other downstream 2914591 10611196 ~ 10613104 (+) True AMCG00007307
TU28829 other downstream 6782068 14478673 ~ 14489692 (+) True AMCG00007337

Expression Profile