RNA id: AMCG00007223



Basic Information


Item Value
RNA id AMCG00007223
length 993
RNA type mRNA
GC content 0.50
exon number 8
gene id AMCG00007223
representative True

Chromosome Information


Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 7838818 ~ 7844361 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATTCAGAACGTGCTTAGCCTGTTCTGTGCGGTTCTAACGGAGCATAAGGTCCTGTTTCACTCGACAAGCTACCAGAGGCTGGGAGATGCATGTAGGGCATTAGAGTCATTGATGTTCCCTCTAAAATACAGTTATCCTTACATTCCAATCCTGCCGTCGCGGTTACTAGAAGTGCTGAGTTCTCCAACGCCCTTCATCATCGGCGTGCACTCCGTGTTTCAAAGTGAGATTCAGGAACTGGTTTTGCACCCGGACCTGGAAGTAGCAGATAATGCTTTTCCACCTCCACGCACTGCTTCCTCCAATATTAAATTGCTGGACAAAGAGGTGCGAGGTGTATTTCTCCGGTTATTTGCACAGATCTTTCAGGGGTACAGGTCATGCTTGCAATTGATTCGCATCCATTCAGAGCCTGTTATCCACTTCCACAAGTTAGTTGCCTTTGATGTTGAAAGATttaaagaggaggaggagaaccCCAAAAAGTTACAGAAACGTATTCGGGAACTTGCAGAGCAGCTTGAGAAAAATGAGAACCCTAATCCTCACATGGCGTTCCAGAAGGTGCCTAGGCCCACGGAGGGCTCCCATTTGCGTGTACACGTGATGCCTTTTCCCCGGGTGAATGAGGAGAGGGTGCAGGCCCTGCTTCAGGAGGGGTTAGCCAAGCACCACAACAACCCCCCTCCTGCCCGGGCCGAGAAGAAATGTGTGGTGCCCGCTGGGCCACCCGTGGTCTCCATAATGGCCAAAACTGGGTCAGTTTTCAACAGTGCACGGAGACTGGAAGTAGTAAGGAGTTGTATCGCATTTGTCTTTGATAATAAAATACTGGAGACTGAAAagACTCTGCCAGCTGCTCTGCGGGCTCTGAAGGGGAAGGCCGCCCGCCAGTGCCTGACTGAAGAACTCAGCCTACATGTGCAGCAGAACCGGGCCATTCTAGACCACCAGCAGTTTGATTACATTGTGCGCATGATGAATTGTGCATTA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU27621 lncRNA upstream 133459 7705148 ~ 7705359 (+) True G22038
TU27601 lncRNA upstream 162941 7669719 ~ 7675877 (+) True G22027
TU27550 lncRNA upstream 231747 7606579 ~ 7607071 (+) True G21985
TU27508 lncRNA upstream 307048 7531563 ~ 7531770 (+) True G21949
TU27480 lncRNA upstream 341719 7496693 ~ 7497099 (+) True G21924
TU27671 lncRNA downstream 56418 7900779 ~ 7901175 (+) True G22076
TU27779 lncRNA downstream 336311 8180672 ~ 8183421 (+) False AMCG00007232
TU27780 lncRNA downstream 336311 8180672 ~ 8183421 (+) False AMCG00007232
TU27781 lncRNA downstream 336311 8180672 ~ 8183421 (+) False AMCG00007232
TU27784 lncRNA downstream 336311 8180672 ~ 8183421 (+) False AMCG00007232
AMCG00007219 mRNA upstream 128529 7708259 ~ 7710289 (+) True AMCG00007219
AMCG00007220 mRNA upstream 133975 7702259 ~ 7704843 (+) True AMCG00007220
AMCG00007217 mRNA upstream 142213 7680455 ~ 7696605 (+) True AMCG00007217
AMCG00007218 mRNA upstream 179581 7657532 ~ 7659237 (+) True AMCG00007218
AMCG00007216 mRNA upstream 188787 7640451 ~ 7650031 (+) True AMCG00007216
AMCG00007225 mRNA downstream 21017 7865378 ~ 7887173 (+) True AMCG00007225
AMCG00007224 mRNA downstream 127915 7972276 ~ 7984466 (+) True AMCG00007224
AMCG00007234 mRNA downstream 161208 8005569 ~ 8037874 (+) True AMCG00007234
AMCG00007233 mRNA downstream 195333 8039694 ~ 8043027 (+) True AMCG00007233
AMCG00007235 mRNA downstream 205759 8050120 ~ 8071159 (+) True AMCG00007235
TU27445 other upstream 459872 7374323 ~ 7378946 (+) True G21891
TU26964 other upstream 2258524 5565941 ~ 5580294 (+) False AMCG00007148
TU26961 other upstream 2268739 5565941 ~ 5570079 (+) False AMCG00007148
TU26962 other upstream 2268739 5565941 ~ 5570079 (+) False AMCG00007148
TU26956 other upstream 2276664 5558805 ~ 5562154 (+) True AMCG00007147
TU27825 other downstream 523075 8367436 ~ 8396242 (+) True AMCG00007243
TU27900 other downstream 860296 8704657 ~ 8711311 (+) True AMCG00007253
TU28037 other downstream 1592163 9436524 ~ 9499728 (+) True G22372
TU28420 other downstream 2766835 10611196 ~ 10613104 (+) True AMCG00007307
TU28829 other downstream 6634312 14478673 ~ 14489692 (+) True AMCG00007337

Expression Profile