RNA id: AMCG00007224


Basic Information

Item Value
RNA id AMCG00007224
length 3455
RNA type mRNA
GC content 0.41
exon number 7
gene id AMCG00007224
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 7972276 ~ 7984466 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCAAAAGGTCAAAGTTCACCGATCTGTCACCAGCCAGGAACCGGGCGAAACTTAACACAGACCTCCGGCTTCCTACACGCCTTGTTGAAAACCTTCTTCGGGTTAGACATCTTAAGAGTGAGTGGATTTCTTCCTCAAAAATGGCCAAGAAGCGAAGAGACAGGCGGGAGGTGGACAACATTGCGACAGAATCGACCACGGAAGaggacaggaaaacaaaagaagggGATGCTCTGAAAGcTCCATTGTATTCTGAAGGGGGGTCGGCCCGCCTGTCTCTCCTCATTTTGCTCTCCATTTTCCTGAGTGCTGCTTCAGTCATCGACGAGAGAGAGAAGATGAAAATCCCTAAAGACATGGATGATGCCAAGGCCTTGGGAACAGTGCTGTCAAAATACAAAGACACTTACTACACTCAGGTCCTGATAGCCTACTTCGCTACATATCTCTTCCTCCAGACCTTTGCCATCCCAGGTTCCATCTTCTTGAGTATCCTGTCAGGTTACCTCTACCCATTCCCCCTGGCCCTGTTTCTGGTTTGCCTGTGCTCGGGCCTCGGAGCCTCCTTCTGCTACATGCTGTCATATCTCGTGGGAAGGCCAGTGGTctacaaatatttaacagaGAAGGCAATTAAATGGTCCCAGCAGGTTGACAAGCACAGAGAACATCTAATTAACTACATTATATTCCTGAGGATCACCCCTTTCCTTCCCAACTGGTTCATTAACATCACCTCTCCTGTCATTAATGTTCCCCTTGGGGTGTTTTTTATCGGAACTTTCTTTGGGGTGGCTCCTCCATCCTTCGTAGCCATCAACGCAGGGACAACCCTGTACAAGCTCACCACCGCGGGGGAGGCGGTGTCCTGGAACTCCCTGGCTGTGCTGGGGGTCTTGGCTGTGCTGTCCATTCTGCCCGTCTGCTTCCAGAAAAAACTGCAGCAGAAGCTGGAGTAGAGGATCCCTCCCACCCCCGACCCCTCAGCCCCCTCAGCTCAGCTCAGGATCGGGGCAGGAGTCCGGCCGCTGTCACACTGTCCGTCAGCTCTCCATGAACCACTCAGGTCACTCTGGAAATCCATTGCCAACGGTCCATAGAGCGCTTGCCCACGCCGTTTCTGCGAGGCGTGCAGTTGAGGGAGACCTTTTACAAGCAGAACATCTTGACTGTCCTCTCAGTCAGCCCTGGACTTTACCTTatctgttaattattattatttttaaaatgttttcacactgCAATTCAAAGATGGGGGGGGAAAAAGTGTTGTGCCAAGCGCACTGTGAATAATGACGGTGTAAGATTGTTCAGTTAACTTAAAAGAAGCTACCATcctctgtttccatttttttccctctctctctgatttttaatgctacattttttaaatatttatttcagagacTTGTGTTTGCTGATTGTAATAACTAAATATGCGTAAAGGGAAAGCAATATTTTCAGATTGAGTGttcagtttttacttttgtgtttCGTTTCTTTCCGTTTGTCGACTTTCATGGCAAGCGCCTGGTCAGTGTAGTGCAGGCCTCACAGCTGTCTACGATACACTAGTAaaagtcttatttttttgtcGTTTTGTAATGGAAGTTTCGGTTCAATTTCACGGTTTTCATCGACGGAGAATTGTCTTGTCGCATTTGGTATaaggctatttttttttttttttctttttctttttaatcaagaACATAAATCGTTATTCCATTGTTGAAACTTGAGCATAATTTCCTGCTTGGTTTTGCTTACCTAGCCAAGGAGagttaaaatgaacagaaacagaCGGCTGAGACATCTCTAACCCGTTCTTGTTTATCAACACCATTTACAATAATGAGGAATTCAGTCCTCTTAATTAAGACTATGGGGGTGGGTTGCAATTTATTATATTAGACAAGTCAGTGTTGCCTGCGTCTGAGCTGGTTTATTAGACAATACAGGACATGTGGAGTGACCTGAGAAGTTAATTTATCACCAGGGTGTCTGCCAGTGATTCTGGTTCTAGTCTGATGGATCTCTGTTAAAGCAGAACAGCAGATGCATTTAAGAAAGAggatgtgtgtgggtgtgtgtgggtctcagtgtgaatgtgtgggAAGTTAGCTGGTTGCTCATTTATTAGAGACCTCCAAAATGCTAAAAGAAAATCTACCAATACCATTTCTCCACTTGTGGGATCTGTGTAACATAACGTGGCATTGTATTACCTTGAGTCCTTTGTCAGATCAGTTTTTTGAATTCAATAGTCTTCTCATTGTTACAtttggtatatttattttatttggttacTTGTCTAGTATGATTATTTGTGAATGCTTgtagtttgctttgttttacacttgcattacatgtattttgcagACTAAAAGTGACACAATAGATGTTTACTAGAACAATCATTTAGACCTATATCAAATTATCTACAGTTGAGGGAGGAGATGCAGGCATTTTAGATTATCTGCTGGGATTTACCCCCCTTCGTAAACGATGAAGAGGAAAACAGttggttttaattaacacaCGCTTGGAATGTTTCTACAGCTTTCCAAATGCCGATATGACCGATTTTAATGCTGCCAAGATAACAGCGTGgcacctttttctttttcaagattttgtttgtattgagATCAACTTGGTAAAAATGCACTGAATTGGAAAGTGACTTCTCATCATTAGATATTTGGTGTTTTCCAGCACCTTTAAACCTTATCATGCGTTGCCTTACATCTTGAATTCATCGGAAGTGTAAGTGTGGTTTAGAAAACCTCTTTTTCAATATCAAAGTGTCCTCTCgggtgtttatgtgtgtttattttataaatatatataagcaaGCCAATTAATGCATTTGCCAACAAGGTTTCAGCCAGTTTCAGGTTCAGTTACACTAGTGTCACAATTCTCCATTTTCTTCATTATCACTGCACTCCATCAGTATCAGCACAAGATCCTCATTCTCTTTGTCCTGTTAGAAATGTAGATTACAATGTGACAAGCTTAATCTAATTACAATGAAACAGGGTTtagatgttttatatatatatatatatatatataacatgtcatACTAAACGTATATTGATTCAAAGGCAGAAATATTAGAACTCCATAGATTTTCACTTTCAAGACCACCAGGTGTTTCTTCAGTATACCTCTAAATAGTAGAGACTGCAATATTAAATtggtatttgatttgattttttttttctcctgtaaagTGATGTCATGTGCAAAGGAATGGAATTCTTCCACTGTTCTGTTTGGGCTGTATACCTTATGTAAAACGGTCCTTTTATTATGCTCGGTTAACAACAGTATTAAATTGTACActtgaaaaaaaattaatgttCTGCagtatgatatatatttataaataccatcctttgatcttttttttttccaacttcacaaaaaaatgaatttttattatt

Function

GO:

id name namespace
GO:0008045 motor neuron axon guidance biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU27671 lncRNA upstream 71101 7900779 ~ 7901175 (+) True G22076
TU27621 lncRNA upstream 266917 7705148 ~ 7705359 (+) True G22038
TU27601 lncRNA upstream 296399 7669719 ~ 7675877 (+) True G22027
TU27550 lncRNA upstream 365205 7606579 ~ 7607071 (+) True G21985
TU27508 lncRNA upstream 440506 7531563 ~ 7531770 (+) True G21949
TU27779 lncRNA downstream 196206 8180672 ~ 8183421 (+) False AMCG00007232
TU27780 lncRNA downstream 196206 8180672 ~ 8183421 (+) False AMCG00007232
TU27781 lncRNA downstream 196206 8180672 ~ 8183421 (+) False AMCG00007232
TU27784 lncRNA downstream 196206 8180672 ~ 8183421 (+) False AMCG00007232
TU27821 lncRNA downstream 269427 8253893 ~ 8254655 (+) True G22192
AMCG00007225 mRNA upstream 85103 7865378 ~ 7887173 (+) True AMCG00007225
AMCG00007223 mRNA upstream 127915 7838818 ~ 7844361 (+) True AMCG00007223
AMCG00007219 mRNA upstream 261987 7708259 ~ 7710289 (+) True AMCG00007219
AMCG00007220 mRNA upstream 267433 7702259 ~ 7704843 (+) True AMCG00007220
AMCG00007217 mRNA upstream 275671 7680455 ~ 7696605 (+) True AMCG00007217
AMCG00007234 mRNA downstream 21103 8005569 ~ 8037874 (+) True AMCG00007234
AMCG00007233 mRNA downstream 55228 8039694 ~ 8043027 (+) True AMCG00007233
AMCG00007235 mRNA downstream 65654 8050120 ~ 8071159 (+) True AMCG00007235
AMCG00007236 mRNA downstream 89302 8073768 ~ 8079862 (+) True AMCG00007236
AMCG00007237 mRNA downstream 95707 8080173 ~ 8087434 (+) True AMCG00007237
TU27445 other upstream 593330 7374323 ~ 7378946 (+) True G21891
TU26964 other upstream 2391982 5565941 ~ 5580294 (+) False AMCG00007148
TU26961 other upstream 2402197 5565941 ~ 5570079 (+) False AMCG00007148
TU26962 other upstream 2402197 5565941 ~ 5570079 (+) False AMCG00007148
TU26956 other upstream 2410122 5558805 ~ 5562154 (+) True AMCG00007147
TU27825 other downstream 382970 8367436 ~ 8396242 (+) True AMCG00007243
TU27900 other downstream 720191 8704657 ~ 8711311 (+) True AMCG00007253
TU28037 other downstream 1452058 9436524 ~ 9499728 (+) True G22372
TU28420 other downstream 2626730 10611196 ~ 10613104 (+) True AMCG00007307
TU28829 other downstream 6494207 14478673 ~ 14489692 (+) True AMCG00007337

Expression Profile