RNA id: AMCG00007232


Basic Information

Item Value
RNA id AMCG00007232
length 4634
RNA type mRNA
GC content 0.51
exon number 19
gene id AMCG00007232
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 8147398 ~ 8183421 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAAAACACCACATGACAACAACAATCACAAAGAGATTTCTGATATTTCCCTCTGCTCTCGTTCCAGGTGCCAATCAGCATCTCCTCCTCCTATTTTCTCTCCAGTGAAAGGGCCAGCACACCCTCTGAGTGACAGTGAAGAATCCTACCGCTACATCAGGTATGCCAAGGCTGGAGACGGCAAGTTCCTGAGCCTGACGAACCGGAGCAATAGAGCCTCGACCTTGCGACCCGGCTCCACCCTGCCTTCTGACATTGAGTCACAGAACAGACTCCTGAAATCGGTGAGCATCGGCTGTCTGGACAACAAGTTATCGATCTACAAACCGCCAGGTGGTGGTGGGAGCCGGGAACAGAAGGAGAATCTCCTGGAAGCCTGTGCCGGAGATGGAATAGGCCCTAGCCAACTGGGCTGGAGCACGCTCTCACTGGGACCTGCCTCCAACCACAGGAGCCTCTCCCTCAGCAGGGCCAGCGTCTGTTCCCAGTCTGTGGGCATCCGCAAAAAGATTTCCGAATGGGAGTGCAGGAAGGCCGCCCCACATAGGATGAGTCTCTGCCTGGACAAGAGACCCCTGGGTGAGCGAGTGGGTGGCAGTGAAGGCTGCCCAAGCCTCCTGTCATCGCCGTGCAGCGAAAAGACCTTTGACTTCAAGGGCATCAGGAGGATGAGCACAACGTTCTCCGAGTGCTCCTACCCTGAGACTGAAGAGGAGGAGGCCTCGGACCGAGAGCCTCTTGGCAGGTTTGAAAAGAGGTTGAGCAAAACGGACTCGGGTCTCTTTCCCCGCTCCTCCTCCAGAAAGGAAACATCCGCAGTCCTAAACCGGATACAAAAGATTGAGCAGGCTCTCAAGGACAGCCCCAGCCGAGGTCCGCCGCAGTACCCGAGCAGCTGCTATGCCCAGGACAAGACACCAAGAAAGTTCACGATCGGTCCCCCCGATGATTCGGACAGTGCCTGCACCAGTAAAAGGGGCAGCATCAGCTCGGTGATAACAGAGCCAGACTCCACCCCTGGGATTGACAAGCTGTCCAAAATGAAGCAGAGGTTCAGTGTCAGTTCTGCAAGCTCCTGCAGCCCTGAGCTGCTTCCTGAAATCTCAGGAGGTACCCCAGTAAACCCTGTGCCCAAACCCAAACGCACCTTTGAGTACGAAGCGAATGGCAACCACAAGAGCAACACGCCGAGCAACGGTCTACCTCCCACCCCACCCTCTGTCTCCCCTCCGCCCCTCCCCTCTACCCCTGCTCCCCCCATCACACGGAGGCAGAAGAAGGAGGGGAGCCTGTATAAGAAGCTGCAGAACAGAAAATCTTTTGAGTCTGAGGATGCAGCGAGTCTCCAGTTATCGTATCCCTCGTCCCCGAGTGAAAATGGCACTGCCTTGCCTGAGACCCACCGACGCCTCAGCTCCAAAAGCACTTTAGAAGAGAACACTTACGAAGACATTGTAGAGTCATCCAAAGAGAATCCGTACGAGGATGTTGACCTGAAGGGCCGTGGTGGAGGACGCAAATCCAAACTGTCATCTGAGAACTCCAGGGATCCACTCGACAGGATGTGGACCTCACAGGACAGGAAGTACACTACGCCTCCCCAGTGCCTTGCCTTCAAGCTTCCCTCCAAGCCCAGCAGCCAGTCCTTGCGTCTCCCCGGGCCTGCGGACAGGAAGGGCCACCGTTTGTCACGCCTGCCCAAGAGACACAGCCACGATGacatgctgctgctgccccAGCTCAGCCTGCCCGTCTGTGGCCTGTTGGACGACAGCCTGAGCACCGCCAGCGACACCCTGGCCACGTGCCGCCTCAGGAGGATCCCCAAGctGGTACGAAGGATTAACTCCATCTACAGCAcaaaaagggggaagaaaagacTTAAGAAGCTTTCGATGTCCAATATTGAGACTTCATCATTGCGGGATGACAACAGCGAGAGTGAGAGTGACTCTGACGATCGGTTCAAAGCTCACACCCAGCGCCTGCTCCAGCTGCAGTCCATGCTGAGAAAAGCTCCCAGTTACCGCACACTGGAGCTACAGTTGATTGAGTGGCAGGAGCGCGAGCTGTTTGAATACTTTGTAGTTGTGTCCCTGAAGAAAAAGCCCACCAAGAACTCCTACACTCCCGAAGTCACCTACCAATTCCCCAAGCTAGAGAGACCCACCAAACAGATGAGGGAGGCCGAGCAGCGCCTCAAAGCCATCCCTCAGTTCTGCTTCCCTGATGCCAAGGACTGGAACCCGGTGTCAGAGTACAGCAGTGAGACTTTCTCCTTTATGCTGACTGGAGAAGATGGTAGCAGGAGGTTCGGATACTGCAGGAGACTGCTGcCCAGTGGAAAAGGACCACGCTTACCTGAAGTGTACTGTGTCATCAGCAGACTGGGCTGTTTCGACTTGTTCTCTAAGATTCTGGATGAGGTGGAGCGGCGGAGGGGGATATCAGCTGCTCTGGTCTACCCCTTTATGAGGAGCCTGATGGAATCACCCTTCCCGGCACCAGGAAAGACCATCAAAGTTAAGACCTTCCTGCCAGGAGCCGGCAATGAGgTGATTGAGCTGCGCCGGCCCATGGACTCCCGGCTGGAACACGTGGACTTCGACAGTCTGTTCAGCTGCCTGAGCGTGCGGCAGATCATCAGGGTGTTCGGCTCTCTGCTGCTGGAGCGCAGAGTTATCTTTGTGGCAGATAAACTCAGCACCCTGTCCAGCTGTGTACATGCTGTGGTGGCCCTGCTATACCCCTTTTCCTGGCAGCACACCTTCATCCCGGTGCTGCCTTCTTCCATGGTAGACATCGTCTGCTGCCCGACCCCCTTCCTGGTGGGCTTGCTGTCCAGCTCCCTCCCTAAGTTAAAGGAACTTCCTGTGGAGGAGGCTTTAATGGTGGACTTGGGAACTGACCGCTTCATTAGACAGATGGATGATGAGGCCACATTGTTGCCACGGAAATTGCAGGCGGCTCTAGAGCAGGCTTTGGATCACAGGAAGGACCTGATCAATCAGGACTCGGACAGCGAGTCAGATGAAGAATGTAACACCCTGAACGGCGTCGTGTCGGAGGCCTTCATCCGCTTCTTCCTGGAGACTATCGGGCACTACTCGCTGTTCCTGACGCAGAACGACAAGGGCGAGCGGTTGTTCCAGCGGGAGGCCTTCAGAAAATCCGTTGCGTCCAAGAGCATCCGCCGTTTCCTGGGCGTCTTTATGGAGTCCCAGATGTTCGCTGGCTTCATCCAGGACCGAGAACTGAGGAAGTGCAGAGCCAAAGGTCTGTTCGAGCAGCGCGTGGAGCAGTACTTAGAGGAGCTGCCAGACACCGAGCAGAGCGGCGTGAACAAGTTTCTGAGAGGACTCGGAAGTAAAATGAAGTTTCTTCACAAAAAGAACTAAAGAAACCACATTctactgtacttttttttttttaaccaaatatCAAAGACTGTGGAGCCTTTATTGTACAAAGTTCTATTGCAGAGTGTGCACATTTGAAAAACTGATACCagatcaaatgtattcatacatttgGAAAGATTTCTACAGCAGGGGCCAAGAGCTGTTGAAAATTTTGTACATATTTCACTGTAAGCTGGCTGtgattttttaatatgcatttttttctttcagcctGTGATGACTTGTGTATATGACTTGAGTTAAACTTGTTACAATAAAATGAGTTGgtaatgtatgcatgcatgGATGGACCCAGACTAATGTGCATTTGACTGTTTCAGAATTAACCACTGATGTTAGAGGATGCTTGTGGAGAATCAGATCAGATGTAGTGAGAGAGAATGCAACCAATGAGAAAAGGCTTTATGCTACAGTACTGAGGGGGTCAATATAAAGTTGCTTTGATTAGGTTTATATTTTAGGTTCAGCTTTTTTTCCTCATCACTGAATAATGAGGTACTTAAACCCCCTGCATTTAGCAATGGTCAGTAAATGGTTTTGTACATGTAAAGCactacttaaatatatatatgaagaaaataCCTGCTACTTTGTCTTAACTTCTGTGACTGATTTCATGACTGGTTACTTTGTCAAATAtgtacaatttacaaaaaataaagtatgtgCAAAGTATTCAAATGTGTCTGTTTAATAATGATGCTCTGAAACCACAGTCAGTAAAGACATGActccagaaacacacacacctggctAACTTGAGGCTCAGCCCAATGCTTCCCAGCTAAACATGCTTCAGCTGGATCCATTTCAAATCTAAATACACATTCCACCtttgcaagaaaataataaataaaagcttctGGGATCATGAAGTAAGCAGGCCAAAGACACTCCTTTTACAGAACAGTTTATTCTTGCAAATGATGGTGCAAAACATTTATGCCATCAATACACAAGCACCACCAGCTCCCTTGATCTTCTCCTCTGCCCTTCTGCTGAAAAACTTGGCCTTCACAATGACCGGCTGCTTGGGCAGTTTGCCTTTGCCCAAGACTTTGAAGTAGCCCTGCCGAAgaatataaaacagattttacAACCCAACCTAAAGCAGATCACCAGCTATTCAACAAGCACGAACAACATCAATGATTGGAGCGGGCCCGTCTGGTTTCTTGGCGTAGTTGAGTCTGGTCTGCTCACTGACCAAC

Function

GO: NA

KEGG:

id description
K20161 DENND2; DENN domain-containing protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU27671 lncRNA upstream 246223 7900779 ~ 7901175 (+) True G22076
TU27621 lncRNA upstream 442039 7705148 ~ 7705359 (+) True G22038
TU27601 lncRNA upstream 471521 7669719 ~ 7675877 (+) True G22027
TU27550 lncRNA upstream 540327 7606579 ~ 7607071 (+) True G21985
TU27508 lncRNA upstream 615628 7531563 ~ 7531770 (+) True G21949
TU27821 lncRNA downstream 72313 8253893 ~ 8254655 (+) True G22192
TU27834 lncRNA downstream 249522 8431102 ~ 8431862 (+) False AMCG00007242
TU27835 lncRNA downstream 263345 8444925 ~ 8445550 (+) True G22204
TU27839 lncRNA downstream 268504 8450084 ~ 8450494 (+) True G22208
TU27840 lncRNA downstream 269187 8450767 ~ 8450978 (+) True G22209
AMCG00007231 mRNA upstream 45610 8098065 ~ 8101788 (+) True AMCG00007231
AMCG00007230 mRNA upstream 51216 8092029 ~ 8096182 (+) True AMCG00007230
AMCG00007237 mRNA upstream 59964 8080173 ~ 8087434 (+) True AMCG00007237
AMCG00007236 mRNA upstream 67536 8073768 ~ 8079862 (+) True AMCG00007236
AMCG00007235 mRNA upstream 76239 8050120 ~ 8071159 (+) True AMCG00007235
AMCG00007244 mRNA downstream 5839 8187419 ~ 8205121 (+) True AMCG00007244
AMCG00007245 mRNA downstream 35998 8217578 ~ 8221636 (+) True AMCG00007245
AMCG00007241 mRNA downstream 60604 8242184 ~ 8251819 (+) True AMCG00007241
AMCG00007243 mRNA downstream 204490 8386070 ~ 8395869 (+) False AMCG00007243
AMCG00007242 mRNA downstream 249609 8431189 ~ 8451277 (+) True AMCG00007242
TU27445 other upstream 768452 7374323 ~ 7378946 (+) True G21891
TU26964 other upstream 2567104 5565941 ~ 5580294 (+) False AMCG00007148
TU26961 other upstream 2577319 5565941 ~ 5570079 (+) False AMCG00007148
TU26962 other upstream 2577319 5565941 ~ 5570079 (+) False AMCG00007148
TU26956 other upstream 2585244 5558805 ~ 5562154 (+) True AMCG00007147
TU27825 other downstream 185856 8367436 ~ 8396242 (+) True AMCG00007243
TU27900 other downstream 523077 8704657 ~ 8711311 (+) True AMCG00007253
TU28037 other downstream 1254944 9436524 ~ 9499728 (+) True G22372
TU28420 other downstream 2429616 10611196 ~ 10613104 (+) True AMCG00007307
TU28829 other downstream 6297093 14478673 ~ 14489692 (+) True AMCG00007337

Expression Profile