RNA id: AMCG00007254


Basic Information

Item Value
RNA id AMCG00007254
length 854
RNA type mRNA
GC content 0.47
exon number 10
gene id AMCG00007254
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 8880884 ~ 8957404 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gCTTCTCTAAGTTTTTTACTGAAGGAATCACAAACCAGCTGATGGGCTGCTATGTGGATATATCAATGGACGATGTTATCCTGGTCCGTGTCTATGGCAAAAAGACTGACCTCTTCGTAGACCGTGGAAATGAGCTGAAAAGCTTCATGGTTCTCCATGCTCACAACTGTGGACCTCAGCTGTACTGCACTTTTCAGAATGGCATCTGCTACGAGTATTTGAAGGGAACGGTTTTGAACGAAGGGCTGCCTGCGAGGACCGCCTCGCAACAAGAGAGTAAACAGCTGCCGGGCTGGAGCGGCAGCCGGGAGCAGCACTGTGCGAGGttgtCTCTGGTaggGTTTCTGACAGAGGTACCCAGCATTGACATCCTCACGAGTGAAACCGAAATGCTCAAAAAGCATCTTTCGCAAATCAACTCCCCAGCAGTGCTGTGTCATAATGACCTCCTGTGCAAAAACATCATCTACAATGAAGACAACGGCTTGGTAAAATTCATTGATTATGAATATGCAGGTTACAACTACCAGGCTTATGACATTGGCAATCACTTCAACGAGTTTGCAGGTGTGTGTGATGTGGATTACAGCCTCTACCCCGGCCAAGAGCTACAAAACGAATGGCTTGCAACCTACTTAGAGTCCTACAAGAAGTGCAATGGCATGGATCCTACAGTTACTGACCTGGAAGTACAGAGGCTGTATGTTCAAGTCTGCAAATTTTCTTTGGTTTCACACTTTTCATGGGGCCTCTGGGCTCTTCTCCAGGCCAGATACTCCACGATTGACTTTGATTTCCTGAGgTATGCAGTGGCTCGATTCAACTACTACTTTAAGAAGAAGAGAGCTGGGACA

Function

GO:

id name namespace
GO:0005520 insulin-like growth factor binding molecular_function
GO:0019838 growth factor binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU27862 lncRNA upstream 276826 8592139 ~ 8604058 (+) True G22230
TU27843 lncRNA upstream 388427 8492161 ~ 8492457 (+) True G22212
TU27842 lncRNA upstream 396380 8484262 ~ 8484504 (+) True G22211
TU27841 lncRNA upstream 429302 8451242 ~ 8451582 (+) False AMCG00007242
TU27840 lncRNA upstream 429906 8450767 ~ 8450978 (+) True G22209
TU27922 lncRNA downstream 18697 8976101 ~ 8978196 (+) True G22285
TU28004 lncRNA downstream 378314 9335718 ~ 9339100 (+) True G22344
TU28027 lncRNA downstream 438817 9396221 ~ 9396480 (+) True G22364
TU28040 lncRNA downstream 531308 9488712 ~ 9492667 (+) True G22373
TU28104 lncRNA downstream 685193 9642597 ~ 9644747 (+) True G22417
AMCG00007251 mRNA upstream 96150 8777969 ~ 8784734 (+) True AMCG00007251
AMCG00007250 mRNA upstream 118808 8751167 ~ 8762076 (+) True AMCG00007250
AMCG00007253 mRNA upstream 170384 8697983 ~ 8710500 (+) False AMCG00007253
AMCG00007252 mRNA upstream 193503 8672489 ~ 8687381 (+) True AMCG00007252
AMCG00007242 mRNA upstream 429607 8431189 ~ 8451277 (+) True AMCG00007242
AMCG00007257 mRNA downstream 221499 9178903 ~ 9185848 (+) True AMCG00007257
AMCG00007263 mRNA downstream 439449 9396853 ~ 9410088 (+) True AMCG00007263
AMCG00007264 mRNA downstream 473015 9430419 ~ 9433315 (+) True AMCG00007264
AMCG00007265 mRNA downstream 565030 9522434 ~ 9526650 (+) True AMCG00007265
AMCG00007270 mRNA downstream 667097 9624501 ~ 9634126 (+) True AMCG00007270
TU27900 other upstream 169573 8704657 ~ 8711311 (+) True AMCG00007253
TU27825 other upstream 484642 8367436 ~ 8396242 (+) True AMCG00007243
TU27445 other upstream 1501938 7374323 ~ 7378946 (+) True G21891
TU26964 other upstream 3300590 5565941 ~ 5580294 (+) False AMCG00007148
TU26962 other upstream 3310805 5565941 ~ 5570079 (+) False AMCG00007148
TU28037 other downstream 479120 9436524 ~ 9499728 (+) True G22372
TU28420 other downstream 1653792 10611196 ~ 10613104 (+) True AMCG00007307
TU28829 other downstream 5521269 14478673 ~ 14489692 (+) True AMCG00007337
TU28988 other downstream 6329093 15286497 ~ 15287960 (+) False AMCG00007352
TU29675 other downstream 9241364 18198768 ~ 18201960 (+) True AMCG00007417

Expression Profile