RNA id: AMCG00007305


Basic Information

Item Value
RNA id AMCG00007305
length 2665
RNA type mRNA
GC content 0.42
exon number 4
gene id AMCG00007305
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 10660181 ~ 10667295 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCTGGAAGTggacttttattttacttttgctttCACTAAATGGAAGGTTGCTAGAAGATGGCAGTTTCGGGGGAGGATGTAATTTTGGTGACGTTATGGGGGTCTGGGGGATTTTGCCACTGTAGGTGTTTTCCAACCATTGGGTTAAagataaaaagattaaaaaagtattttatacaCACTCTGAAGCAGGGTGTCTGCTGATTACTTACTGTACTCACACTGGAAGTCACTACTGCTTTGTCCTACTCATTCATTTGCCAAAACAACTCTCAGCCacatgcatatgtttttttctcctcaaagatttgatttgaaaaaacagaaagaggggaaaattcatcttttttttttcctcgaCACCTTTTAAGCACATATTTGGTGcattttgttcttattattgtaAGCTGATGTATTTGTTCCTGAGTGTTTTAttcaaacctgagagaacttGGAcgaagtgaaacaaaacaaaacgaccATCCTGAGGGTTTTCATCTGAGAACTCCACCCCCAACAATCCACAGCTTCTGACAACGAGTCCTGCAGCTCCCAGTGCTTCTCCAGGTATCTCTGCTGGAACATGACCGTGTTGGAGCTGGACATGCTGACGAACAGGTTTCGGGTTATTGAGTCCCTTCTGGGGCTTGTCGGCTGCTTCTGTGTGATATATGCGGTTTGGACACCCTACTGGCTGGGTAATGGGGGTCTCTGGAATGGAGGgaatgatacacacacagacattgagTCCCTGGACCTGGATTCCACAGGAGGACAAATCTTTAAAGTGCTGGAGGCTGAGCGCGTGTTTGCAGTGCTCACATTCCTCATGGCGGTCAGCGGGGCGTCTCTCTGCATCATCTTCATCTTTTGCTGGTCCTCCAAGACCACTTGCTCCTACAGTAATGCCAGATCCCTGCTGAAGGCCGGCCAGGCTCTGTACCCCACCACCCTGCTGCTGGTCATCCTCTTTCCCACAGggtttttcttcattttgtgcTGGTCCCTCTTCACCAGACACCACAAGGATGAGATCACCAATGACATTACTCAGCTGGGCTCTTCCTATTGGCTGGGGGCTGTAGGCTGGGTCTTGCTACTGGGCATCctgcctgttgtttttgttgtggagCAGTCGGTCTGTCCCGACCCCATGGCAGAAGCGGAATCCTTGCTAAATGCCATAGTCACCTCACCCCACAAAAATGGCAAGCACTGCCATAGTGAGGGGTGGCATATGAGCTCTGTGAAGAGTGAGCTGAGCTGCAGATCACTAGCTTGATGTATCTGTTTCCCATAGAAATCATGAAGAGCTTTAAAACACTGTCGGGGGCACAGCCACAACGAGAAACATTTGACGTTTTCCTCATAAAGTGCTGGTAATTTGGTCACTTCTCAGGCAACCTTTCTTCTCTGGAAACACATGCACCTCATCCAGATATAATGAGAGAACAGTAGTCCCCTCTGACTAGTGAAGATCTTTGAAGAGGTTGCTGAGCACAGGGAAAATAGTCAAGacaaagaaaaattgaaatctTTTGGTATCAGCCACACTGTTAGGTACACACTGAGAGTGACAGTTTGTCGAACTGTCGGGACAGGTTTCTCGTGTCAACACTGCTGTATTCATTTGGAGGAAAATGCTACTTTGGAGGAGATACAAATCAGTGATTTCCCCAGACGAGGGCTTGTGACAGAGTTTAATTATttgaagtaaacaaaacaaaaatgtatacatgtaaacaTGTGGTAAACAAAGGATGCTTCCCTGTGTTAATGTAGATGCAAATcccagtacaatacagtgttaAGCAATGGAGGCATTAAGACAAGTTATTGGGTACTAATGGGATAAATAACCTGGGCTAATATTGGGTTCCCAACTGGAGCCAGATGACACTAAAACCCCTCTAAAATTAGGCGATGTCATATCTGTACACTTGGTGCCatacatctgtgaaaagtcaGTTGTGACAGATTGACACAGTACACTAACATACAGCCTTCAATTGTGTTTTAATCCTTTCAGATTGAACAGACAAAGGACCAACGCTGTAACTAAATGATTAGACTATGAtgctacatttatatttcaaacttcaaacgctttaacataaaaaatatgtagtttATAAAGAAAGTATCTAGGGAtagatatacaaataatattatatattgtaacaattgaaAGTCACCCTGTAttagggcatctgctaagaaaagtcataagaataataataggACCCTACAATActaatattaaattattcaatcCACATGCCAAGACTATAGATTATAATATgttacaaaactattttttctgttgttgttgttgttgttgttgttgttgtagtggtggtgttttgtttcaatCATGTCTGCCTAAATCAATTGAGTAAGTGATTGAGTATTGTTTACTCCTCAATTTCTAATTACTGATCTCATTTGTTTGTATAATAAACACCAATCTGGAGTAATCTCAATGGTTGTGCAAAATGGTATTTTAAACTTAATGGTGTAGCTGATGGAAAAAGGGGAGAACATTTGCCATACCAAttaaaaattgtaaattagTGTCTAGGGTGAATGGGtctgttaaggtacaatgctccagttgaagcaacccttcgggtcccagtgaatcaggcaccccagtgagcgcttc

Function

GO: NA

KEGG:

id description
ko04913 Ovarian steroidogenesis
ko04927 Cortisol synthesis and secretion

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU28342 lncRNA upstream 338323 10320469 ~ 10321858 (+) True G22596
TU28244 lncRNA upstream 418773 10239589 ~ 10241408 (+) True G22528
TU28245 lncRNA upstream 418773 10239589 ~ 10241408 (+) False G22528
TU28246 lncRNA upstream 420316 10152489 ~ 10239865 (+) False G22528
TU28168 lncRNA upstream 718293 9936920 ~ 9941888 (+) False AMCG00007278
TU28495 lncRNA downstream 444048 11111343 ~ 11111723 (+) True G22712
TU28504 lncRNA downstream 562530 11229825 ~ 11230393 (+) True G22720
TU28516 lncRNA downstream 844858 11512153 ~ 11522358 (+) True G22730
TU28528 lncRNA downstream 873688 11540983 ~ 11541524 (+) True G22738
TU28532 lncRNA downstream 903657 11570952 ~ 11573862 (+) True G22741
AMCG00007308 mRNA upstream 5192 10628350 ~ 10654989 (+) True AMCG00007308
AMCG00007307 mRNA upstream 48271 10611533 ~ 10611910 (+) False AMCG00007307
AMCG00007304 mRNA upstream 51166 10577246 ~ 10609015 (+) True AMCG00007304
AMCG00007303 mRNA upstream 83017 10534157 ~ 10577164 (+) True AMCG00007303
AMCG00007300 mRNA upstream 239270 10394165 ~ 10420911 (+) True AMCG00007300
AMCG00007306 mRNA downstream 71750 10739045 ~ 10743675 (+) True AMCG00007306
AMCG00007310 mRNA downstream 91539 10758834 ~ 10777707 (+) True AMCG00007310
AMCG00007311 mRNA downstream 921339 11588634 ~ 11603718 (+) True AMCG00007311
AMCG00007317 mRNA downstream 2874461 13541756 ~ 13551121 (+) True AMCG00007317
AMCG00007321 mRNA downstream 2955849 13623144 ~ 13624807 (+) True AMCG00007321
TU28420 other upstream 47077 10611196 ~ 10613104 (+) True AMCG00007307
TU28037 other upstream 1160453 9436524 ~ 9499728 (+) True G22372
TU27900 other upstream 1948870 8704657 ~ 8711311 (+) True AMCG00007253
TU27825 other upstream 2263939 8367436 ~ 8396242 (+) True AMCG00007243
TU27445 other upstream 3281235 7374323 ~ 7378946 (+) True G21891
TU28829 other downstream 3811378 14478673 ~ 14489692 (+) True AMCG00007337
TU28988 other downstream 4619202 15286497 ~ 15287960 (+) False AMCG00007352
TU29675 other downstream 7531473 18198768 ~ 18201960 (+) True AMCG00007417
TU29676 other downstream 7539783 18207078 ~ 18208308 (+) True G23698
TU29705 other downstream 7622813 18290108 ~ 18292338 (+) True G23724

Expression Profile