RNA id: AMCG00007310


Basic Information

Item Value
RNA id AMCG00007310
length 3477
RNA type mRNA
GC content 0.39
exon number 7
gene id AMCG00007310
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 10758834 ~ 10777707 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGGCTCAACAGAAACCCCTGGCAGAGAGTTCCTTTGAAGAAGCTTAAGTGTGTTACAAAGTGCAGAGCTGGAGTAACAACAGAGGCGAAGGATATGCAAGGCTGAGAGCATGACAGTTTTGTCAGCTCCAGTTGCTCAGTATGCACATAGCGAGGTCTGAGCCAGGATCATGGACCACAACAGTATCGTCCAGGAAACTCTGGATCTCTTCTGTAGCTCCTCTGAACAGACATACAAAGAGTTCTTAGGTTCTTTTACATGCCTCTCGAATGGTGACACTGGGAACTGTGGGTTAAAGTCAATATCTGATCGGCCCCTCAAAGTGGCCCCTGTCAGGGAGAAAGACGAAGCCAAGCAGACAGTGCCGGAGGCAGGAACATCGCAGGGCCACGCAGCACTACCTGCAGATCAAGACGAGATGGTCCTGGCCACGGGCATTACAATTGGAGGCTTTCAAGATGGATTGATAAGTCTGGCTGAAAGGGTGAAGTTGGACAACTTTCTGAATTCTCAAGATTTCGGCTACGGTGAAGAAGGTCACCTTAAAATGGAGACAGCTCAGGGGACGCTTCCTGGAGAAGCACAGGATGCACTACCAGCTTATTTTCCATCCTTCCACCAAACTCAGCTTGAGTGCAGTGCAGGGAAGAAGCAGCAAGAGCCTGCGAGCTCAGCCTTCACGGTGGACACAGAGGAGGTGTTCCCATTCTGTATTGATGAGAACTTTGACTATGACCGTGTGGTACTTTCACACAAATACCCCCCCTCAGCACAGGACTGCAGACAACAGCCAGAGACAAACATGTAACCATCACGGTGGAGATGAACAAGCTGCACTGACGTTTCAGGGCTGCTCCACTGGTGGACTTTCTTCAAAAGACATCAGAATGCATCAatgcactgaaaaacaaatacttgtttgttcttaaattaataaattcaaTTTCTCAAAACTAGTAACAGAAACTTGTCCATTCTACAAGTCATTCTTAGTAATGTACAGAATTTGGTAGCAATTCCcagtaaagtaaaatgtaattaaatctattacttatgttcagtaaacaaaaatacttttaattataaGCTGATAAGAAACTCAAGTAATCCAATTACTTGGTTTAAGCCATCCTGATAGAACAAGCAAATCCAAGTAAATTTGTTGTaatgaaaagtaatgaaaagtaaataatagtaatttgtaGTAATATGCAAGTAAATGTTGTAATTGTTATAAGCAAAATATATCCATCTACCAGCCTGCTATTTAAGATATTAATATACTGTAGCATTCTTTGGATCTAATTCAAATATGTTGTCAGTTCATCCCATAAACTGATAAAAGGATGAGGGTTAAAAGAACTGCCAGATAAACCAGAGTGAAAACACACCTCAATGTGAGACTCGCCTTCCCTCCCAATTCTAAATGTTAGCTATTGATGTCAGGTTATTATCTAAGCATGGACAGTACAAGCACAGGCACTGTGATACCCCCTACATCTCAGTCACTCCTTTGGAGACATAAACTGTGATATTTTACAAAGAGTGATTCCAGTAGCaccaaaccaacaaacaaataaaaacataatgtaaagCTTAGTATCAATACCTGGGGTTTAGCAAATAAATCTGCGAATGCCACACGGGGGCAAATGAGAAtgaattgaattattttcttacGAGTATGTTTCATGTCACAAAGCATTTCATGTTCTAAATCACTTAAAACatatgtttctttctcttttaaaataattgcagtCAAAGGCACTTTACATGAAATGTAGAATGTGTCTTATGCACTGCTGCAGAATTGTCTACTCATTTGGTTTGCCATGCTAATGCAGTTATTAGCTCCTTTCGTTTCATCCCATTTGTGCCAAAGCCCTGAAGGGAAACCCACGTGGAGACATGTGGATGGGGTTCAGAAGTTCAGCAATAGTATATCAAGAGTTTTGAAAGTGCATAGCAAATatgcacattttcaattattcacTCCATagtacaatattttgttatacatatttaataccaTCACTTTTCCATTTCTCCTGTGTTGCTTGATGAAGCATTGTAGAAAACATTCAGCAAGAAGAAAATATTAGTGATATCATATGTGAGTTTTGGAACAGATTCTGCTCAATCGGGATGTTTTGACACAGTCTTCAAGTGTAAATGAAGATGAGAGATCATAAAAGCTTTTGTAGTCTTTCACAGCGTCTGTTCCTGTCTCCTCTTCATTGTTGTCTTCAAACAGCAGTGCTTTCTACAATACTTTATATTGTCCAAACAAAACATGCACCAAAATTAgattgaacaaataataattgtgttctTTTTAATCCAAACCAGATGACTAATACATTTGCCAGAGTCCAAAAAAtacaacccccctccccaacccGTTTATTTTACAGCCAAACAAGTGTAGACATTCAGACAAAACCTTCACATAGCCCTTGCACTCGGTATAGCCCTATCCTCTATGTACACTGTAGTGTGAAGTAgcggttagggctctggactctgaagtGTAGgatcatgggttcaatcccaggtgggcgacactgctgctgtgtccttgcacaaggtactttacctagcttgctccagtaaaacacagctgtataaattagTAACTATGTAAGAAAAGGTATAGGAGGTAAttgtgtctgctaagaaatataatatgaaaacCCATTTTTGCTAGATATGGACATTGTTCTTCACATCATTGTTAATATCAATGCTATGATGTTTTCCAGGCTCAGTATATATGTGCTCTTCAACTCTGCCCGAGTTTTACCTGTGTAAACTTGTATAACAGTACAACAGAATTGCTGTAGAGTTTATAATCCAGGTGAATTTAAAAACAGCTCCCCCCTCCACTCTTCATtttgtgtaaattaatttgattctggtttctcactatcttcctgcacctttgttttcctttttttttcaccttttccTTTGACTTTTTTGAAGTCCTTCATTTTCTCCCccagttttcattttgcttcTGAATGCTACATTAACCTGAAAACTCAGGGGGGGCAACAATGGGTATTTCATTTCTGAATGAGGTAGCAGACGAGCTGACACagtcacagaaaaataaaaattactgATTTTTTGACCAAAGTGCTTGTTTAtttcactgagctcttcagccCATTGGTATATAGTCATCATATATAGAGTTTTGCACAggaacatgcacattttgttaCTTTGACACAGGGAAGGCACTACCATCTACAACATagagctttttttatttatgtacaacTGCTTGAACTGGAGAGTTCTGTTGTATGGTCTTTCTGTTTGCTGGGGTATGTGTGTTGCGCTTCATGTGGGGGCTTTTTACACATAAAAGGAACCTTGAGCTCTGAAGCTTTACATGATAAACTTTACATGATAGAAACTACACACTGTAACTATGaacaaataatgataacaacataaaaaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU28422 lncRNA upstream 73766 10626674 ~ 10685068 (+) True G22652
TU28342 lncRNA upstream 436976 10320469 ~ 10321858 (+) True G22596
TU28244 lncRNA upstream 517426 10239589 ~ 10241408 (+) True G22528
TU28245 lncRNA upstream 517426 10239589 ~ 10241408 (+) False G22528
TU28246 lncRNA upstream 518969 10152489 ~ 10239865 (+) False G22528
TU28495 lncRNA downstream 333636 11111343 ~ 11111723 (+) True G22712
TU28504 lncRNA downstream 452118 11229825 ~ 11230393 (+) True G22720
TU28516 lncRNA downstream 734446 11512153 ~ 11522358 (+) True G22730
TU28528 lncRNA downstream 763276 11540983 ~ 11541524 (+) True G22738
TU28532 lncRNA downstream 793245 11570952 ~ 11573862 (+) True G22741
AMCG00007306 mRNA upstream 15159 10739045 ~ 10743675 (+) True AMCG00007306
AMCG00007305 mRNA upstream 91539 10660181 ~ 10667295 (+) True AMCG00007305
AMCG00007308 mRNA upstream 103845 10628350 ~ 10654989 (+) True AMCG00007308
AMCG00007307 mRNA upstream 146924 10611533 ~ 10611910 (+) False AMCG00007307
AMCG00007304 mRNA upstream 149819 10577246 ~ 10609015 (+) True AMCG00007304
AMCG00007311 mRNA downstream 810927 11588634 ~ 11603718 (+) True AMCG00007311
AMCG00007317 mRNA downstream 2764049 13541756 ~ 13551121 (+) True AMCG00007317
AMCG00007321 mRNA downstream 2845437 13623144 ~ 13624807 (+) True AMCG00007321
AMCG00007322 mRNA downstream 2868920 13646627 ~ 13647013 (+) True AMCG00007322
AMCG00007328 mRNA downstream 3197598 13975305 ~ 13981853 (+) True AMCG00007328
TU28420 other upstream 145730 10611196 ~ 10613104 (+) True AMCG00007307
TU28037 other upstream 1259106 9436524 ~ 9499728 (+) True G22372
TU27900 other upstream 2047523 8704657 ~ 8711311 (+) True AMCG00007253
TU27825 other upstream 2362592 8367436 ~ 8396242 (+) True AMCG00007243
TU27445 other upstream 3379888 7374323 ~ 7378946 (+) True G21891
TU28829 other downstream 3700966 14478673 ~ 14489692 (+) True AMCG00007337
TU28988 other downstream 4508790 15286497 ~ 15287960 (+) False AMCG00007352
TU29675 other downstream 7421061 18198768 ~ 18201960 (+) True AMCG00007417
TU29676 other downstream 7429371 18207078 ~ 18208308 (+) True G23698
TU29705 other downstream 7512401 18290108 ~ 18292338 (+) True G23724

Expression Profile