RNA id: AMCG00007311



Basic Information


Item Value
RNA id AMCG00007311
length 582
RNA type mRNA
GC content 0.45
exon number 2
gene id AMCG00007311
representative True

Chromosome Information


Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 11588634 ~ 11603718 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGAAAATCCACTATGTGGgcacagtgagggaaaatagAATGTGTGGTTCAGTCTTGCTGGAGACAAAGGCAATGGCTAAAATACAGTGTGGGCATGTTGATTACAACAGCATTGACAGCATAATTGCTGTCAAATGGCATGACAACAAGTGTGTCTCCTTCCTTAACAATGTTGCCGGTGTGCATCCTATGTCAACTGTTCAAAGACACAgtaaggaggagaagaaaaaactcCCCATTTACTGCCCAGTTGTGGGATCTCTGTACAAAGCTAACATGGGTGGGGTAGACCTAAGCAATATGCTGAAGGCCAAAAGATGGTATTTGCCTCTCTTTGGGTATGTGCTAGATCTAGCAGTCTGTAACAGCTGGCAGATGTACATCCGTGATTGTGGACTTTGCTCAGAAAAGTCAGTTCCCATGAAAGATTTCCGCCTCAGCATCAGAGATAGTTTGCGCAAGTCTGTAAAGAAACCTGGACGTCCATCACTCTCAAGCGCCCCTGTGAATGCAGAGAGCCAGCGAGCCCCACGAAAACTACTGAAGGTCTTTcaagaaaatatttcaaatgtgatCACCTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU28532 lncRNA upstream 14772 11570952 ~ 11573862 (+) True G22741
TU28528 lncRNA upstream 47110 11540983 ~ 11541524 (+) True G22738
TU28516 lncRNA upstream 66276 11512153 ~ 11522358 (+) True G22730
TU28504 lncRNA upstream 358241 11229825 ~ 11230393 (+) True G22720
TU28495 lncRNA upstream 476911 11111343 ~ 11111723 (+) True G22712
TU28547 lncRNA downstream 119774 11723492 ~ 11723746 (+) True G22756
TU28551 lncRNA downstream 209147 11812865 ~ 11813093 (+) True G22760
TU28560 lncRNA downstream 261718 11865436 ~ 11866024 (+) True G22769
TU28561 lncRNA downstream 262445 11866163 ~ 11866484 (+) True G22770
TU28564 lncRNA downstream 273787 11877505 ~ 11877862 (+) True G22773
AMCG00007310 mRNA upstream 810927 10758834 ~ 10777707 (+) True AMCG00007310
AMCG00007306 mRNA upstream 844959 10739045 ~ 10743675 (+) True AMCG00007306
AMCG00007305 mRNA upstream 921339 10660181 ~ 10667295 (+) True AMCG00007305
AMCG00007308 mRNA upstream 933645 10628350 ~ 10654989 (+) True AMCG00007308
AMCG00007307 mRNA upstream 976724 10611533 ~ 10611910 (+) False AMCG00007307
AMCG00007317 mRNA downstream 1938038 13541756 ~ 13551121 (+) True AMCG00007317
AMCG00007321 mRNA downstream 2019426 13623144 ~ 13624807 (+) True AMCG00007321
AMCG00007322 mRNA downstream 2042909 13646627 ~ 13647013 (+) True AMCG00007322
AMCG00007328 mRNA downstream 2371587 13975305 ~ 13981853 (+) True AMCG00007328
AMCG00007327 mRNA downstream 2445675 14049393 ~ 14064082 (+) True AMCG00007327
TU28420 other upstream 975530 10611196 ~ 10613104 (+) True AMCG00007307
TU28037 other upstream 2088906 9436524 ~ 9499728 (+) True G22372
TU27900 other upstream 2877323 8704657 ~ 8711311 (+) True AMCG00007253
TU27825 other upstream 3192392 8367436 ~ 8396242 (+) True AMCG00007243
TU27445 other upstream 4209688 7374323 ~ 7378946 (+) True G21891
TU28829 other downstream 2874955 14478673 ~ 14489692 (+) True AMCG00007337
TU28988 other downstream 3682779 15286497 ~ 15287960 (+) False AMCG00007352
TU29675 other downstream 6595050 18198768 ~ 18201960 (+) True AMCG00007417
TU29676 other downstream 6603360 18207078 ~ 18208308 (+) True G23698
TU29705 other downstream 6686390 18290108 ~ 18292338 (+) True G23724

Expression Profile