RNA id: AMCG00007383


Basic Information

Item Value
RNA id AMCG00007383
length 291
RNA type mRNA
GC content 0.53
exon number 3
gene id AMCG00007383
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 16808264 ~ 16836323 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCCCACGTCGACGAGCCCACGACACCTCAAGAGGACTACAGGGCTCGACAGTACGAACAAGAAAAGAAATCATCTAAACCAGAGGGTGAAGAGGCCTGACTACAAAGTAGCTTATGTCCAGCTGGCTCAACAGCAGACATTCCAGTTCCCGGATATCTTCCCAGAGAAGGACAAGACTCCTGAGCCAGGGTCGGTGGAGGCAATTCAGGAAAAGTTCCAGGAAGATGAGGAGCAGAGGCAGAAACCAGACCCCAGGCGAGGTGGGGTGACCGAATGGTTCGGCCTTTAA

Function

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0005739 mitochondrion cellular_component
GO:0000166 nucleotide binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02892 RP-L23, MRPL23, rplW; large subunit ribosomal protein L23

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU29282 lncRNA upstream 145564 16660874 ~ 16662700 (+) False AMCG00007379
TU29225 lncRNA upstream 397053 16356690 ~ 16411211 (+) False G23322
TU29224 lncRNA upstream 397053 16410773 ~ 16411211 (+) True G23322
TU29191 lncRNA upstream 512256 16293104 ~ 16296008 (+) True G23294
TU29158 lncRNA upstream 650917 16152460 ~ 16157347 (+) True G23263
TU29365 lncRNA downstream 131539 16967862 ~ 16968068 (+) True G23432
TU29366 lncRNA downstream 133482 16969805 ~ 16973419 (+) True G23433
TU29383 lncRNA downstream 211607 17047930 ~ 17048318 (+) True G23449
TU29444 lncRNA downstream 516249 17352572 ~ 17352790 (+) True G23497
TU29465 lncRNA downstream 638640 17474963 ~ 17479749 (+) True G23515
AMCG00007382 mRNA upstream 9020 16791635 ~ 16799244 (+) True AMCG00007382
AMCG00007381 mRNA upstream 42636 16761717 ~ 16765628 (+) True AMCG00007381
AMCG00007378 mRNA upstream 98968 16697272 ~ 16709296 (+) True AMCG00007378
AMCG00007377 mRNA upstream 116045 16683676 ~ 16692219 (+) True AMCG00007377
AMCG00007379 mRNA upstream 145704 16624390 ~ 16662560 (+) True AMCG00007379
AMCG00007385 mRNA downstream 156720 16993043 ~ 17033247 (+) True AMCG00007385
AMCG00007391 mRNA downstream 446237 17282560 ~ 17286192 (+) True AMCG00007391
AMCG00007390 mRNA downstream 468198 17304521 ~ 17310566 (+) True AMCG00007390
AMCG00007394 mRNA downstream 551620 17387943 ~ 17411368 (+) True AMCG00007394
AMCG00007397 mRNA downstream 588103 17424426 ~ 17443207 (+) True AMCG00007397
TU28988 other upstream 1520304 15286497 ~ 15287960 (+) False AMCG00007352
TU28829 other upstream 2318572 14478673 ~ 14489692 (+) True AMCG00007337
TU28420 other upstream 6195160 10611196 ~ 10613104 (+) True AMCG00007307
TU28037 other upstream 7308536 9436524 ~ 9499728 (+) True G22372
TU27900 other upstream 8096953 8704657 ~ 8711311 (+) True AMCG00007253
TU29675 other downstream 1362445 18198768 ~ 18201960 (+) True AMCG00007417
TU29676 other downstream 1370755 18207078 ~ 18208308 (+) True G23698
TU29705 other downstream 1453785 18290108 ~ 18292338 (+) True G23724
TU29768 other downstream 1731446 18567769 ~ 18570464 (+) False AMCG00007433
TU29920 other downstream 2215019 19051342 ~ 19056133 (+) True G23893

Expression Profile