RNA id: AMCG00007385


Basic Information

Item Value
RNA id AMCG00007385
length 2007
RNA type mRNA
GC content 0.51
exon number 10
gene id AMCG00007385
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 16993043 ~ 17033247 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAACGAAACGTGGAAGGGCGCAATCGCCTGTCTCGGTGTGGCCATCTTCTTCGTTATGACCATTGGGATCATTTACTGGCAAGTGGTGGATCAGCCCAATAAGAACTGGATCCTGAAGGGCAGTTTCAGCGGACTCATCTGGGAGAGAAGGACCCATTCTCTGATAATACAGACACTGACCGAGGAGAAGACCTTTGTGGAGATTGACGTGGGAAACTTTCCGGACTTGGAAGTGCCCTTCGTGAAGAACCTGTGCTGGTTGAACAAGACCGAGTTCTGTTACACTTGGGATTCAATTGCAGACTTGGAGATCTCCATGGACTCCGATTACGCACCAGGAACTGAATGCTACAGTATAAACTGGACACCTCTGCATTGTAAGGTGGATCTGAAGGATTGCTTTTCCATGGCCAACATTTCCTGGTATGGTGGAGCAACTGTCCACGGACAGACATGGCCATTAAACAATGTGAATATTTCATCGCAGCCCTTCGTTGTTAGTAACCTGAGAGATAACCCAACGGGCTATGGATCAGTCTTAGAACGCTACTTCCTTGGATCATCAGGTGTAGCTCTGCTGATTGCTCAGGATGTTCCGGTGAATATTTCCATTGACAGCAGGAGGCACTTCTGCTTACAGACGCCACCCACAACAGCGCTAGTGCCCCTGCAGTACAAGGTGTGCGTCGGCGACAACATGAAAACCGTCCACCAGGAAGCGGGAAGCCAGCTTTCTGAGCATGAAAGAGTGCTGCCAAACACTGACATTTTACGGTTGCCATTCTGGAAGCTGTTGGTCAATGTAGATTCGGGAGCCAAAGTGGAGCGGGAGCTGAGGACTTTCTACAACCGACTGAAGAGACACGGCCTAGGGGAGGGTGTAATCAGCCTCAACGAGCATTCCACCATGTTAATCTCTGACATGGACCACGAATCTCTCTACAGCAGGAAGAAAACGTCTTTGAGACAGACCAGGGATCTCCCACTTGTTAAACTTCTGAACATTTCCATTACTCTCTCTCCATACGTGGGTGTGGACAGCCGGCCGTTCCAGACATCACTGCAGGATGGCACAGAAAACTACTGGCTCAGTCTTCCGTCTAGAGCAAATGGATATCTGGCTCCTCTGCTGATGAAGTGGAAGGGCAGGTTTTCTGTGAAGCTGAACATCACAAACCCTGCGGCAGTCAGCTGGTTCCTTGACAGAGTGAGCAGCCAGCAGTCTCATCTTGGGGTGGAGTACATCACACTAGAGGGAGGCGAGGGGAGCCCCTTCACAGAGCAGGCCATAGCTCCCCCAAAAGCCCTGGCAGGAGACGAGTACATCGGTCTCTTCGCTACCATGGCAGCCAAGATAGGCGACTCCTCAATTATAACAGCGGGAACGAGGTCGAGCCACTTGCCGCTGTTTGTCCGGATGACACCTCTGCAGGCAGACTGGAGCTACTCAGGTTTAAAGGGAATTATTCCTTCCATTCTGCACTACAGTCTTCTGGGATACAACTTCTTCATTCCTGATGCAGTAGGAGGTACGCTGTCTAACGAGTTCATAACTGATGAGGAGCTCTTCATACGTTGGCTGGAGATTGTCTGCTTCCTGCCCGTCATCTCCTTCAGGACTCCACCCTGGGTGTCTGGAGAGGACAAGGTCCTAAACCTCACCCACTCATACATAGCCAAGCACCAGGAATTTGTGGTCCCTCTCATTGTAAAGTATGCTGCAGAGTGGCTGGAGGAGGGGAGTCCTATATTCAGGCCCATCTGGTGGCTCAGTCCAGATGACCCTGTTACCTTCACTGTGGATGATGAGTTTCTGATTGGAGATGAGatCCTTGTTGCACCCGTGACAGAGAGAGGCGCAGTCTGCAGAGACATTTACTTACCTGGGAGTGACTTGCAGTGGCAGGATTCAAGTAACGCTCGGGTATTTGATGGCGGGACGCTGTTAGAAGACTATCCAGTCAGTCTTGAGGAAGTGGCAGTTTTCTTACGAAGGAAATcttga

Function

GO:

id name namespace
GO:0005975 carbohydrate metabolic process biological_process
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU29366 lncRNA upstream 19624 16969805 ~ 16973419 (+) True G23433
TU29365 lncRNA upstream 24975 16967862 ~ 16968068 (+) True G23432
TU29282 lncRNA upstream 330343 16660874 ~ 16662700 (+) False AMCG00007379
TU29225 lncRNA upstream 581832 16356690 ~ 16411211 (+) False G23322
TU29224 lncRNA upstream 581832 16410773 ~ 16411211 (+) True G23322
TU29383 lncRNA downstream 14683 17047930 ~ 17048318 (+) True G23449
TU29444 lncRNA downstream 319325 17352572 ~ 17352790 (+) True G23497
TU29465 lncRNA downstream 441716 17474963 ~ 17479749 (+) True G23515
TU29491 lncRNA downstream 453870 17487117 ~ 17487400 (+) True G23538
TU29493 lncRNA downstream 458198 17491445 ~ 17491761 (+) True G23540
AMCG00007383 mRNA upstream 156720 16808264 ~ 16836323 (+) True AMCG00007383
AMCG00007382 mRNA upstream 193799 16791635 ~ 16799244 (+) True AMCG00007382
AMCG00007381 mRNA upstream 227415 16761717 ~ 16765628 (+) True AMCG00007381
AMCG00007378 mRNA upstream 283747 16697272 ~ 16709296 (+) True AMCG00007378
AMCG00007377 mRNA upstream 300824 16683676 ~ 16692219 (+) True AMCG00007377
AMCG00007391 mRNA downstream 249313 17282560 ~ 17286192 (+) True AMCG00007391
AMCG00007390 mRNA downstream 271274 17304521 ~ 17310566 (+) True AMCG00007390
AMCG00007394 mRNA downstream 354696 17387943 ~ 17411368 (+) True AMCG00007394
AMCG00007397 mRNA downstream 391179 17424426 ~ 17443207 (+) True AMCG00007397
AMCG00007398 mRNA downstream 424833 17458080 ~ 17474878 (+) True AMCG00007398
TU28988 other upstream 1705083 15286497 ~ 15287960 (+) False AMCG00007352
TU28829 other upstream 2503351 14478673 ~ 14489692 (+) True AMCG00007337
TU28420 other upstream 6379939 10611196 ~ 10613104 (+) True AMCG00007307
TU28037 other upstream 7493315 9436524 ~ 9499728 (+) True G22372
TU27900 other upstream 8281732 8704657 ~ 8711311 (+) True AMCG00007253
TU29675 other downstream 1165521 18198768 ~ 18201960 (+) True AMCG00007417
TU29676 other downstream 1173831 18207078 ~ 18208308 (+) True G23698
TU29705 other downstream 1256861 18290108 ~ 18292338 (+) True G23724
TU29768 other downstream 1534522 18567769 ~ 18570464 (+) False AMCG00007433
TU29920 other downstream 2018095 19051342 ~ 19056133 (+) True G23893

Expression Profile