RNA id: AMCG00008097


Basic Information

Item Value
RNA id AMCG00008097
length 714
RNA type mRNA
GC content 0.60
exon number 1
gene id AMCG00008097
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 42212372 ~ 42213085 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAACGTTGGGGAAGAGAATCTTTTCCATGGTTCCGACAAGAGAATGAATGACTTGAAATCAATTACCAACGACGCGCTAATTGATCTGACGCAGCGCTACGGCCAGTCCGCCTTCGGCTTCGGCGCTGGCCATGGTGCTGGAAGTCCCGGCCGCTTCCCCCTGTCAGCCGCAGCCGACTTCCTCTCCGGCCAGACGGCGAAGTCCACCGAGAGCGGCGGCGAGCAGAGCAGCGACGAGGACGACAGCTTCGACCACCTGGACCCCAGGAAGAGAGGCTCCGGGTTCGAGCAGGACAAGCACGGCGGGGCTCTCGGCAAGAAGCCCAAGGAGCAGAGGTCGCTCCGGCTGAGCATCAACgccagagagaggaggaggatgcACGACCTGAACGACGCGCTGGACGGTCTGAGGGCCGTCATCCCCTACGCGCACAGCCCCTCGGTCAGGAAACTCTCCAAAATCGCCACTTTGTTGCTGGCCAAGAACTACATCCTCATGCAGGCTCAAGCCCTGGAGGAAATGAGGAGGCTGGTGGCTTATTTGAACCAAGGACAGACAATAACGTCCCCCATCCCCGCAGCTCTGGCCACCTTTGGACAAGCGGCCGTATACCCGTTCTCAGGTACTGCGCTGGCCACCTGTGCCGACAAATGCGCTTCTTACGCCGGGGCCCCTTCAAGTCTCTTTAAACACTGCAACGACAAACCTTGA

Function

GO:

id name namespace
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
K09086 BHLHB4_5, BETA; class B basic helix-loop-helix protein 4/5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35590 lncRNA upstream 25990 42117921 ~ 42186382 (+) True G28421
TU35585 lncRNA upstream 102297 42106867 ~ 42110075 (+) True G28416
TU35554 lncRNA upstream 232288 41977259 ~ 41980084 (+) True G28394
TU35471 lncRNA upstream 276158 41925845 ~ 41936214 (+) True G28332
TU35472 lncRNA upstream 347346 41846992 ~ 41865026 (+) False G28332
TU35677 lncRNA downstream 219751 42432836 ~ 42437228 (+) False AMCG00008102
TU35705 lncRNA downstream 287589 42500674 ~ 42500981 (+) True G28511
TU35721 lncRNA downstream 371147 42584232 ~ 42586668 (+) True G28527
TU35743 lncRNA downstream 408865 42621950 ~ 42622157 (+) True G28548
TU35847 lncRNA downstream 895965 43109050 ~ 43120781 (+) True G28637
AMCG00008092 mRNA upstream 111992 42091557 ~ 42100380 (+) True AMCG00008092
AMCG00008094 mRNA upstream 140199 42071749 ~ 42072173 (+) True AMCG00008094
AMCG00008093 mRNA upstream 156979 42044804 ~ 42055393 (+) True AMCG00008093
AMCG00008087 mRNA upstream 291061 41916706 ~ 41921311 (+) True AMCG00008087
AMCG00008088 mRNA upstream 296841 41908543 ~ 41915531 (+) True AMCG00008088
AMCG00008098 mRNA downstream 66684 42279769 ~ 42289436 (+) True AMCG00008098
AMCG00008099 mRNA downstream 77631 42290716 ~ 42300339 (+) True AMCG00008099
AMCG00008102 mRNA downstream 200547 42413632 ~ 42437183 (+) True AMCG00008102
AMCG00008106 mRNA downstream 225258 42438343 ~ 42442423 (+) True AMCG00008106
AMCG00008105 mRNA downstream 231551 42444636 ~ 42448120 (+) True AMCG00008105
TU35555 other upstream 218995 41992859 ~ 41993377 (+) True G28395
TU35066 other upstream 1965134 40241312 ~ 40247238 (+) True AMCG00008036
TU35023 other upstream 2152986 40056632 ~ 40059386 (+) True G27974
TU34945 other upstream 2377436 39832389 ~ 39834936 (+) False AMCG00008020
TU34851 other upstream 2707995 39503079 ~ 39504377 (+) True G27847
TU35844 other downstream 892628 43105713 ~ 43108242 (+) True G28636
TU35886 other downstream 933688 43146773 ~ 43149043 (+) False AMCG00008120
TU35919 other downstream 1079511 43292596 ~ 43301422 (+) False AMCG00008132
TU36366 other downstream 2810063 45023148 ~ 45036416 (+) True AMCG00008177
TU36420 other downstream 2936344 45149429 ~ 45171828 (+) True AMCG00008185

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00043918 True 1559 mRNA 0.46 1 NC_007134.7 17655790 ~ 17657348 (-)
grasscarp (Ctenopharyngodon idella) CI01000001_04846242_04846925.mRNA True 1894 mRNA 0.46 1 CI01000001 4845807 ~ 4847700 (-)