RNA id: AMCG00008149


Basic Information

Item Value
RNA id AMCG00008149
length 4667
RNA type mRNA
GC content 0.53
exon number 19
gene id AMCG00008149
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 43854025 ~ 43893098 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTTATTTCCCTCTGACTTGCCTTGCATGCTGAGCAGTGGGAGAGTGCAGGAGGGGGTTGGAGCAGGCAGACATTAGGCTGGTAAATTGAAAACAGCAGACCTCAAGGTTAGAGCACATCAATCCTCTGAGATTGGATGCTGGGGAAGTGAAgagcagaaattaaagcagaaGACGCACAGCTGTTGAAGAGtgagagagccagagagagagagcgtgagagagagaaagtgtgtgagggagagaaagagagagagtgtgtgagggagagagagagagagagaggagagaacaaCCTACTGAGAGACTCTCTCACTGACTGCACGTTGCTGGTAGGATTACACTGACAGCAATGGTACCTTAGTTTCCCGGGTGTTGTTGTATTCCTCTGAAATGGACAGCCGGATGGCAATTCATCTTTGGGAGAGCTGTGCATCACCATAATGAGGATATCTGAGAGCAGTGAAGAAGGAGCCCTGCAGCGAAAGTGAACACTCATCTCAGTGAGATGGCAGCGTGGGGGCTGTGGGCCGGGCTGCTGGTCCTGCTGGCATCCCTGTCTCTGGTTGATGGCTCCGTCTTCCTGTCCAACCAGCGCCTGAAGGGACGTTTCCAGAGAGACCGCCGAAACATCCGCCCTAACATCATCCTCATCCTCACCGATGATCAGGACATTGAGCTGGGCTCCATGCAGGCCATGAACAAGACACGGCGCATCATGGAGCAGGGTGGAACCCACTTCTCCAACGCCTTCGTCACCACACCCATGTGCTGTCCCTCGCGCTCATCCATGCTAACGGGGAAGTACGTCCACAACCACAACACCTACACCAACAACGAGAACTGCTCCTCCCCTTCCTGGCAGGCGCAGCACGAGCCGCGCACCTTCGCCGTGTACCTCAACAACACTGGCTACCGCACAGGTTTCTTTGGCAAGTACCTCAATGAATACAACGGGACATACATCCCCCCTGGCTGGAAGGAATGGGTGGGCTTGGTGAAAAACTCCAGGTTTTACAACTACACTCTGTGCCGAAATGGCATCAGAGAGAAACATGGGTTCCAGTACCCCAAGGACTACCTGACCGACCTCATCACAAACAACAGCATCAACTACTTTCGCACATCCAAGAAGCTGTACCCTCACCGACCTGTGATGATGGTCCTGAGTCACGCTGCCCCCCATGGGCCGGAGGACTCGGCTCCCCAGTATTCGGAGGCCTTCCCCAACGCCTCCCAGCACATAACGCCGAGTTACAACTACGCCCCGAACCCAGACAAGCACTGGATAATGAGGTACACCGGCCCCATGAAGCCAATCCACATGGAGTTCACCAACATGCTGCAGAGAAAGCGCCTTCAGACACTCCTCTCTGTGGACGACTCGGTGGAGAAGGTCTACAATATGCTGGTTGAGACGGGCGAACTGGAGAACACCTACGTGATCTACACAGCCGACCACGGCTATCACATTGGGCAGTTCGGGCTGGTGAAGGGCAAATCTATGCCATATGAGTTTGATATCCGTGTGCCCTTCTACATCCGGGGACCCAACGTGGAGGGAGCCGCCATcaATCCACACATTGTGCTGAACATTGACTTGGCACCGACCATTCTGGACATTGCGGGGCTGGACATCCCCCCTGACATGGATGGCAAGTCTGTCCTCAAACTCCTAGACACCGAGAGGCCAGTGAACAGACTGCAGTTTAATAAGAAGGGAAAGGTGTGGAGAGATTCCTTTCTGGTAGAAAGAGGGAAGCTACTGCACAAGAGGCCTGATGGGAAGGAGGTCACCCAGGAGGAGAACTTCCTGCCTAAGTACCAGCGAGTGAAAGACCTCTGCCAGCGCGCAGAGTACCAGACGCCCTGTGAGCAGCTGGGCCAGAAATGGCAGTGTGTGGAGGACCAGACTGGGAAACTGCGGCTGCACAAGTGTAAAGGAATGGCAAGTCTCTCGGTCGCCCGGAAACCGGGCCTGGCCAGCATGAAGGCCCAGTTGTACGGGCAGAGCTCAGATGGCTGTGACTGTGACGTCCCCGATCTCAGGATGAGCCCCTTCAAGAAGAAGAAGCTGCTGTCCAAGAAGAAGTTCAAAGCCAGCAAGAACTACCCTCGCAATCGCTCTTCGCGCTCGGTGTCTGTGGAGCTCAACGGGGAGGTCTTCACCGTGGACCTGGAGGACGGCTACCAGCCCATCACCCCCAGGAACCTCAGCCGGCGCCACAGTTTCGGGGAGGAAGGCGAGGATGGGCTGGAGGGGCAGGAGGACGATGATTTCAGCGGGATGGGCGGCACCAGCAGCCCCAGCACCAACAACGACCTCCTGGTGCCCTCATCCATCAAGGTCACACACAGGTGCTCCATCCTGGCCAACGACACAGTGAAATGTGATGTAGGCTTGTACAAGTCCCTCCAGGCCTGGAAGGATCATAAGCTGCATATTGATCACGAGATTGAAACTCTGCAGACTAAAATCAAGAACCTGAGGGAGGTCCGAGGGCACCTGAAGCGAGCCCGACCCGAGGAGTGCGACTGCAACAGATTCAGCTACCAGTCTAAACACAAGggaaaactgaaacacaaaggaGCCGGCCTCCACCCTTTTAGGAAAGTGGTTCAGGAGAAGGACAAGAAGCAGTGGCTGCTGAAAGAGCAGAAGCGCAGGAAGAAGCTGCGCAAGCTGCTGAAGAGGCTGAGGAACAACGACACCTGCAGCATGCCCGGCCTCACGTGCTTCACACACGACAACCAACACTGGCAGACCGCCCCCTTCTGGACAATGGGGCCGTTCTGTGCCTGTACGAGTGCCAACAACAACACTTACTGGTGCCTGAGGACGATCAACGAGACCCACAACTTCCTGTTCTGCGAGTTTGCCACAGGCTTCCTGGAGTACTTTGACATCAACACTGACCCCTACCAGCTCCTGAATGCGGTGAACACGCTGGACCGCCACGTCCTCAACCAGCTGCACATCCAGCTGATGGAGCTGCGCGGCTGCAAGGGCCACAGGCAGTGTAACCCCCGCACGCGCAACCTGGAGATCGAGGGCAGATCTGGGAGGGATGGGAGGGCTAGGTCCTGGGAGCCCCTGCCTGTGGACTTCTCTGGGGAGACGAACTGGTTAGAACTTGAAACCTTGTACAGACTGGAAGAGCACGCCTTcgatctcaaattgaattttaaCGTGAGCCTGGAAGACTGGATCAATTTTGAGGGTGCTGTAGACCGCATGTTTGCCCTGCTGGGCCATTCCGACCCCTCGGACAGACGCCACGCCCACCGGCGGCCCCCCGGGGCTCACCTGGGGCCGCAGGGAGGGGAGGCAGCCCGGGCGTCAGCTGCCCCGTCTGCCTCCGCCCTCTACCTGACCACGCTGGCCACGCcggccctgctgctgctgcggggCGCCCTGGGGCTCTGCCACGAGCGGGGCGTCTCCTCTGTCCTCGGCTTCCTGGACAGGGGGGAGGCTTTTCTCAACGAGCTGCTGGAAGACAGCGAGTGCAgtgtggaggaagaggaggaggaggagccccAGAGCCACAATCCCCGAAGAGTGAGCCGAGGGCCTTGCACCTGCAGCGACTTCACCGGAGACAATTCGCACGGGGTTCCCATCTGAAATCTTTAGAACATTAGGCCTCACAAAAAGCTATACAGTAACTATACAGTCCTCACCCCCCTTAGTCTCCAACCCCCATTTCAAGttgaccaaattaaaaaaaaaagtctcctaCGACTCTTCCCCCATCAGACAGACCGCTTTGTGGCACCTTCAAATGGAGACGTGAATGAAGTTCACGACTAACAGACTTGACCAGGGCTTCAGTGCAGTACCTTGTTTATATCAATGgactccaaaagaaaaaaaagtttaatattcACATGGTGACATGGGAAGGGTTAGTATTGTGTTCGAAcccaatttttattttgcagtttgttttttagattgtGGCTCATTTTATTTTCGCTGTAGTGTTCTTGGTACTTAgttttttgtagattttgtctcttttatttaattctggCATTAGGCTGAGACTGACCTGTGTTGTAATCGGATGACGAGTGACAAAACGCATCAGATCTCACCCCTCCACTCTGGCCCGTGGGTTAGTGCTGCAGCGTCTCTTGACATCGATGTGCCGCCAGCCGCGGACTTGGGTTTTCTTTCACTGCCATTTAGGTTTTTGAGGACGGTGGTCATTTGGTTCTATGTATTATTCCAGAAGCTTCTCCCGTGTATTTCATTCTGTCACAGGAGTCTTTCTGCAGGGGGGTATTACTCATGAAGCAATAGTATTCCAGTCATGCACTCAGCCTCTTATAATGGAGagattaaacatatatacatttattttttagcagttGATATTGAATGCCTAGATTAACCGTGTAACTCCTTCCTGGTTCACCCAAACCACGGCCCCTgccagaattaaaaaaaaatgggcaGAGAACTATAGTTTGGGCGCCACCTGCTGGTGACACCAGGCTGATAGATCATTGCCATCCCCGATTTCCCGACTGTTCTTTCTCTGAAAGATGATATAAAATACCAAGCACAACATACTGTAACCACACTTGTCAAATTTCATATCTTTCTTAGCAGgagttattattaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa

Function

GO: NA

KEGG:

id description
K14607 SULF; extracellular sulfatase Sulf

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35900 lncRNA upstream 652822 43177802 ~ 43201203 (+) True G28678
TU35847 lncRNA upstream 733244 43109050 ~ 43120781 (+) True G28637
TU35743 lncRNA upstream 1231868 42621950 ~ 42622157 (+) True G28548
TU35721 lncRNA upstream 1267357 42584232 ~ 42586668 (+) True G28527
TU35705 lncRNA upstream 1353044 42500674 ~ 42500981 (+) True G28511
TU36139 lncRNA downstream 1011 43894109 ~ 43895951 (+) True G28862
TU36138 lncRNA downstream 1087 43894185 ~ 43895951 (+) False G28862
TU36140 lncRNA downstream 1087 43894185 ~ 43895128 (+) False G28862
TU36226 lncRNA downstream 160867 44053965 ~ 44056608 (+) True G28931
TU36252 lncRNA downstream 798443 44691541 ~ 44749908 (+) True G28956
AMCG00008150 mRNA upstream 158461 43678115 ~ 43695564 (+) True AMCG00008150
AMCG00008145 mRNA upstream 190317 43662564 ~ 43663708 (+) True AMCG00008145
AMCG00008146 mRNA upstream 232882 43605257 ~ 43621143 (+) True AMCG00008146
AMCG00008140 mRNA upstream 346972 43497288 ~ 43507053 (+) True AMCG00008140
AMCG00008142 mRNA upstream 359823 43471650 ~ 43494202 (+) True AMCG00008142
AMCG00008154 mRNA downstream 83203 43976301 ~ 43999833 (+) True AMCG00008154
AMCG00008155 mRNA downstream 108636 44001734 ~ 44034340 (+) True AMCG00008155
AMCG00008156 mRNA downstream 141288 44034386 ~ 44036127 (+) True AMCG00008156
AMCG00008153 mRNA downstream 147680 44040778 ~ 44044810 (+) True AMCG00008153
AMCG00008157 mRNA downstream 213357 44106455 ~ 44131719 (+) True AMCG00008157
TU35919 other upstream 552603 43292596 ~ 43301422 (+) False AMCG00008132
TU35886 other upstream 704982 43146773 ~ 43149043 (+) False AMCG00008120
TU35844 other upstream 745783 43105713 ~ 43108242 (+) True G28636
TU35555 other upstream 1860648 41992859 ~ 41993377 (+) True G28395
TU35066 other upstream 3606787 40241312 ~ 40247238 (+) True AMCG00008036
TU36366 other downstream 1130050 45023148 ~ 45036416 (+) True AMCG00008177
TU36420 other downstream 1256331 45149429 ~ 45171828 (+) True AMCG00008185
TU36476 other downstream 1447498 45340596 ~ 45343914 (+) False AMCG00008194
TU36524 other downstream 1547415 45440513 ~ 45441064 (+) True G29183
TU36777 other downstream 2374793 46267891 ~ 46268327 (+) True G29353

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00043866 False 2604 mRNA 0.51 19 NC_007134.7 15206058 ~ 15284757 (-)
grasscarp (Ctenopharyngodon idella) CI01000021_02005120_02042997.mRNA True 2855 mRNA 0.50 16 CI01000021 2004826 ~ 2043167 (-)