RNA id: AMCG00008150


Basic Information

Item Value
RNA id AMCG00008150
length 1689
RNA type mRNA
GC content 0.57
exon number 9
gene id AMCG00008150
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 43678115 ~ 43695564 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTCTTTGCTGAATCACTGGGTCTCTCTCTTACTCTGTAATCGGCTCAGTTCTGCTGCAGTTGTCTCACTGCAGTCTTTGCTTTTCTTCCTCTGCTACCGCATTGCTGTATTACAGGGGTTGCCTGCATTGCGCAGAGGAGGCCAATTCTACAACCCCCTCCCAGGGACATAAAACTGCCTGGGCTGGAGCTCCTAGTCCCTGCTGTCTGAGATCGCAGCTACAGCCCTCACTCTGTGTTGACGTGCTTTGATTCCCGAATCCTCTGCCTTTGTTCGGCCCCTGTCCCAAAAGACCAGCTCTGCAGAATGGGGAAGGAGAAGGTGCACATCAACATTGTGGTCATTGGCCATGTGGACTCCGGGAAGTCCACCACCACCGGCCACCTCATCTACAAATGCGGAGGGATTGACAAGAGAACAATTGAGAAATTCGAGAAGGAGGCTGCTGAGATGGGCAAGGGCTCCTTCAAGTACGCCTGGGTGCTGGACAAATTGAAAGCAGAACGTGAGCGCGGCATCACCATTGACATCTCCCTCTGGAAGTTTGAGACGACCAAATATTATATAACCATCATCGATGCGCCTGGACACAGAGATTTCATCAAGAACATGATCACAGGAACCTCACAGGCGGACTGCGCTGTGCTGATCGTGGCCGCCGGGGTTGGGGAGTTTGAGGCCGGCATTTCGAAGAATGGGCAGACGCGGGAGCACGCCCTGCTGGCCTACACACTGGGGGTGAAGCAGCTGATCGTGGGCGTCAACAAAATGGACTCCACCGAGCCGCCCTACAGCGAGAAGAGGTACGACGAGATCGTCAAGGAGGTCAGCGCCTACATCAAGAAGATTGGCTACAACCCCGCCACCGTGCCCTTCGTGCCCATCTCCGGCTGGCACGGTGATAATATGCTGGAGCCTTCTCCCAACATGCCCTGGTTTAAAGGCTGGAAGCTGGAGAGGAAGGAGCACCATTCCAGTGGGGTGTGCCTGCTGGAGGCCCTCGACACCATCCTGCCCCCATCTCGCCCAACAGATAAGCCACTGCGCCTGCCCCTGCAAGACGTCTACAAGATCGGAGGCATTGGGACAGTCCCGGTGGGCCGAGTGGAGACTGGGGTCCTGCGACCTGGCATGGTGGTGACCTTTGCCCCCGTTAACATCACTACAGAGGTGAAGTCAGTGGAGATGCACCACGAAGCCCTGAGCGAGGCCCTGCCGGGGGACAACGTGGGCTTCAATGTCAAGAACGTCTCCGTCAAGGACATCCGCAGAGGAAACGTGTGCGGAGACAGCAAGGCAGACCCCCCCCAGGAGGCGGCCAGCTTCACAGCCCAGGTCATCATCTTGAACCACCCTGGGCAGATCAGTGCTGGCTACTCCCCTGTCATTGACTGCCACACTGCACACATCGCCTGCAAGTTCGCCGAGCTCAAGGAGAAGATCGACCGCCGCTCTGGGAAGAAGCTGGAGGACAACCCCAAAGCTCTCAAGTCTGGAGATGCAGCCATCGTGGAGATGGTTCCTGGCAAGCCCATGTGTGTGGAGAGCTTCTCTCAGTACCCACCCCTGGggcGCTTCGCCGTGAGGGACATGAGGCAGACAGTGGCAGTGGGTGTCATCAAGAACGTGGAGAAGAAGACAGGTATTGGGACAGTCCCGGTGGGCCGAGTGGAGACTGGGGTCCTGTGA

Function

GO:

id name namespace
GO:0006414 translational elongation biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0003746 translation elongation factor activity molecular_function

KEGG:

id description
K03231 EEF1A; elongation factor 1-alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35900 lncRNA upstream 476912 43177802 ~ 43201203 (+) True G28678
TU35847 lncRNA upstream 557334 43109050 ~ 43120781 (+) True G28637
TU35743 lncRNA upstream 1055958 42621950 ~ 42622157 (+) True G28548
TU35721 lncRNA upstream 1091447 42584232 ~ 42586668 (+) True G28527
TU35705 lncRNA upstream 1177134 42500674 ~ 42500981 (+) True G28511
TU36139 lncRNA downstream 198545 43894109 ~ 43895951 (+) True G28862
TU36138 lncRNA downstream 198621 43894185 ~ 43895951 (+) False G28862
TU36140 lncRNA downstream 198621 43894185 ~ 43895128 (+) False G28862
TU36226 lncRNA downstream 358401 44053965 ~ 44056608 (+) True G28931
TU36252 lncRNA downstream 995977 44691541 ~ 44749908 (+) True G28956
AMCG00008145 mRNA upstream 14407 43662564 ~ 43663708 (+) True AMCG00008145
AMCG00008146 mRNA upstream 56972 43605257 ~ 43621143 (+) True AMCG00008146
AMCG00008140 mRNA upstream 171062 43497288 ~ 43507053 (+) True AMCG00008140
AMCG00008142 mRNA upstream 183913 43471650 ~ 43494202 (+) True AMCG00008142
AMCG00008143 mRNA upstream 267384 43392104 ~ 43410731 (+) True AMCG00008143
AMCG00008149 mRNA downstream 158461 43854025 ~ 43893098 (+) True AMCG00008149
AMCG00008154 mRNA downstream 280737 43976301 ~ 43999833 (+) True AMCG00008154
AMCG00008155 mRNA downstream 306170 44001734 ~ 44034340 (+) True AMCG00008155
AMCG00008156 mRNA downstream 338822 44034386 ~ 44036127 (+) True AMCG00008156
AMCG00008153 mRNA downstream 345214 44040778 ~ 44044810 (+) True AMCG00008153
TU35919 other upstream 376693 43292596 ~ 43301422 (+) False AMCG00008132
TU35886 other upstream 529072 43146773 ~ 43149043 (+) False AMCG00008120
TU35844 other upstream 569873 43105713 ~ 43108242 (+) True G28636
TU35555 other upstream 1684738 41992859 ~ 41993377 (+) True G28395
TU35066 other upstream 3430877 40241312 ~ 40247238 (+) True AMCG00008036
TU36366 other downstream 1327584 45023148 ~ 45036416 (+) True AMCG00008177
TU36420 other downstream 1453865 45149429 ~ 45171828 (+) True AMCG00008185
TU36476 other downstream 1645032 45340596 ~ 45343914 (+) False AMCG00008194
TU36524 other downstream 1744949 45440513 ~ 45441064 (+) True G29183
TU36777 other downstream 2572327 46267891 ~ 46268327 (+) True G29353

Expression Profile