RNA id: AMCG00008181


Basic Information

Item Value
RNA id AMCG00008181
length 4764
RNA type mRNA
GC content 0.50
exon number 4
gene id AMCG00008181
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 45107413 ~ 45121480 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAGACCAACAAGCAGGAATGTTTAAGTGCTCCAGCTCCCAGCCAGCTAGCGCAGGATTGTCTGGCTCAGCCCACGAGCATCACAGCAACAGCACGAGGGGAAGGCAGGATGCCGAGTGTACAGCCGCCCCTGCCAGCAGTGTACCTCAACCCTCTGAGCTTTCCCTTCTACCCACAGCTGCAGCCCATGCCCAGACAGGACTCCCTGACCATCCACTTGTCAGTTCCTCAGCTGCCAGAGGGCATGGGCCAGGCAGAGAGCAACCAGAGCCTGCCCACCCTAACGCTCAACATCGTCAATGGCGTGCCCATGCTGCAACCAGGTCAGAGGACAGCCAGCGTGGCCCCAGGGAAGCCCAGGTCAGCTGGGAAGCACGTGTGCCAGCACTGTGGCCGTGACTGCCTGAAGCCCAGTGTCCTGGAGAAACACCTGCGCTGCCACACCGGGGAGAGGCCCTACCCCTGTGCCACCTGCGGCATTGCCTTTAAGACACAGAGCAACCTGTACAAGCACAAGCGCACCCAGGCACATGCCCGCCTCTCTTCGGAGTCCGAGCGCAGCGTCAGCATCAGCAACCAGGAGACTTCCCAGGGGTCCACTGACACCTGTCATTCACTGGAGAGCATGGAAAGAACACAGAGTGGAGACTTGGGAAGCTTTGAGAaagaaactgctgctgctgctcctgctgttaCACCTCCAGTAGAGCCCTGTGCCCCAACCACAGATCTTGCTCTTGCGGCACAGGGTAGGACAGTACCCGATACTGGCTGGGCTTTGCACCAGGCTGCTTTGGTCATCCTTGCACCTGTCAATGGAAACCAAGAAAATCTGAGCTCCCTTGCTCAGAGAACAAAGCAGCCATCTGGACCTGATAGCCGACAGAACAGCGAGGATGGAGAAAGGCCGTCACCTCCAACGCCAAACCGACATCTTCCCCTTCAAAGGCAGGAAGCCACCTACTTTTCCAAACAGTGGGACTCGCGAGTTTCGAGTGGCAAGTCCCAGAGCCATGACAGCACGGATTCTGGGTATCTGTCACTTTCAGAAAGTGGTGAGCAGCAGTCTTGGGTTTCCAGCCCTAACAGCAGCCTGCGGGAGCCCAGCATGGAGTCTCTTCTGGAAACCACCATGGAATACCAAGGTGAGGCAACAGCCCCACCTACAGCGAACTGCACAGCCGAGACTGACACCACCCACAGTGGGACCAAACCCAGGACATCGGTGCTGGAGAAGAAGACATTAGAGGAGCGCATCTCCAAGCTGATATCTGACAACGATGCCTTAGTAGATGACAAATGCTTGGAGAACGTGAGACCCAGAAAGACAGTGCTGTCCAAGCAAGGCAGCATCGACCTCCCCATGCCCTACACCTACAAAGACTcgtttcattttgaaattaaagcaaGCAAGAAGACCAGCATTGGTGCAAACTGGCCCAAGCCGGACAGCAGTCCTAAGCCGGCTCCATACAACTCAGTGCCCACCCAACGTTCAACAAGCCTTGAGCGCATACCTGTGACTCGGAGCAGTTCCATGCCTTTTATTGCCAGCTCTTCAGGTTTGGAGAGGAACACCACACAGTGCTTTTATCACAGAGAGACTGCTTTCATAGGAGGGAGGGACAGCTCTGGTCATTTGTACACAGGAGACTTTGCGGCAAGATCTGTCGATCTACAGTCCACACATCACAGATCCCTTGTGAGACAGGTGGCTGTGGACTGCTTGCCAACATCTGAAAGTCATTCTACATCTGTGGAGGAGGGCTGTCAGAGCAGCCTTAGCTCCGAGGGGGACTCCATTGACAGTGTTGGTGAGTCCAGTGGGGGTAAGTGTCGCCGTAAAAAGGCACCAAAGTTCTCCTACAACAAATGGTACATGTACGGAGATGGAACTTTCAGGAAGCTGTACCAGATGGAGAAAGGTTCTGATCAGAATGCCAAGCTAGCTGGTGGAATTGGAAAGGGAAGGAAAACTCCAGTGAGCATGGAGCCAGGAAGCATTTCAGAAGATCAGAGTAGCAGCATGGCTACTCCAGCAACTCCAGTGCTCAGAGTACATAATATTTCAGAGACATCTACAGATCTGAATGCACCTGCACGTGCAGACAAAATTGACATCATTCCATCATCCTGCACTCCCACCAGTGCAGAAATCAATTCAGCAAGTATCGCACTAGATGCCTCAGGCCAATACAAACTTCTAAACCAGAGAGTGCCATGTAATGTGGGCCGATTGGAAACCAACCACGGAAACCAATACTACAAATGTGCCAATCACAACAAAGTGGGCAAGGAACTCAGCCAGATGCTGTCTCCTGCATGCACGGCCCAGCGATACAAACTAACAGAGACTAATCCCAGCATTGTGCCACACAGCATTAGTGTGTTCCCCTCTTACAAATGCCACAGCAGCCCAGCCACTATGGACAGGGGGCTGGTTCATCACATTCTGACGGGGGACAGTGACAACATCTCATCCATACCATCACAACCCCCACCTTCACGGCCATCATCTGCCCAGCAAGAGGGTGTTCAAGCAGGCATTCATTTAAAGAGAAGTGGAGATCAGAAGGTGATGGGACCAGCTGCTAAGCCCACTTTCTCATGCTGCAAATCTGAAGACAAATCAGAAGAGAGAAGACAACTTTGTGGCTCCAAATCAGTGCAGGAAGTGCAGCAAAACCATACTGCAGGTGGGATGTTAAAGAGTTTGAcatgcacttccacttttcAATCAGAGAGGGCAACAGAGAGCGACAGCAGCAGGAGGGCTACACAGTCAGAAACCAGAGGAAGTGGTTCCTCTGATTCCCAGACACTAGTCGGAGAACATGCAATGGAGGCAGAGGCCTGTAAGACACAACAAGTACATGAGAAGACCTCTAGGAAGACTTCAGACCATCTGGATACCATTCGTCCCTCAGCATCCAACACACTGTCTGACGTTCTGTGCCAGGATGCTGTCCCCTGTCCCCCTTCTGGCAGAGAAGTTTGTCTCATTCCCTTACCAGACAGCCATTCTCACCCCCCAGCTGGCTGTGTGCAAAAGGCCTGTCCTATCCTACTGGCTAGTGAGGGCCTCACTCAGGTCACAAGAAGTGGCATCAGGAAGGCTCCAGCTACTCTGGTCTCAGAGAGGAACTTCCTGTCAATGGAGAAGAGCTTCCAGTCTGAGAGCCCCATCCCAGTACAGAGACAGGCACATTGGAGCCCAAGGGGGGCTCCTGCAGTGAAGGGCAATCCCAGTGCTGGCCCCCGTGGCCCACACAGCCTTCCCCTCCCCGAACTGGTTAACACAATGGTGGACAAGAACAAAGCCAATCCAGAGCACTCGGAGGCAGACCCACTTCACCGTAGTCCTCGCTTGAGTTTGGCATGCTCCTCTACCGTCCCCCTGTCAGAGGATGTGGCCCAGGTGGCAGATCCAGAGGGTGTACTCACAATCAACGTCCGGTGCTCCTTGCATGAGGACATGCCTCACGACACGACTTTGGAGGGGCTCCATGAAGTCCCTCTGGGCTCTAGCAGATCCGTGCAGACCGGCCTGGAGGAGACTGACACCAGCAGCAGCGATGACGAGGGTAAGCTGGTCATTGAACTGTAGGGGCAACTACGCACTGCAGAGACACTCACTTCTCCGGCATCAGCCCAGCACTTTCCAGAGCAGCAACGGCACACAGATCCAGGACACGAGTCAACCTGGAATCTGTGATGACATCCCTCAATAACATTGCCGGGTTGCTTGTACAGATACATACGAACTCTTACCCTACAAGGCTTGAATCCCGTGTTTCTTGGGATTAGCTGACTGTTTGTGCAGTTACATTAAATATGAAGCCTGTTGTGCCAAATATCTTCATCGGAACAGAGTGAAACACagactgaaagagtgaaaaacTTTAGACTTGAGGGCTGCAGTCCACTGGGTTTCATAGGTTAACACTTAAAGAAGAAATGGCCATATTTAGGCAAACATTTCTTGAATTGTATAGATAACGGGTCTGAAATGGGTCAGAATGAACAAACTAAGCACTGAGGCCCTTCCTATACCACTTCCAGTAAGTTCACTAACAGACTATTGCTGTAAGTAAGAAGAATATTGTCAGACAAGTGTGACAAATCAGACAAGTGTGACAAAATATATAGCGAGGAAGCCAGACGGTAACTGGGCGTGAGGGCGGATGAGTGGTGGTAACTAAAAATAAGTGGGAGGTGTCTGTACATGCTAAAACTGACAATAGTGTTACTTTTTtgttctgatttgttttgttattagcTGGTGTGTAAAATTTCCTTTATTCTATTTCATTTCAAGTTGTGGTCCtctgaatgtaaaaaatgaGACCATGCATTTGTGGCCTTTCAGGTTTTTTTGGATTGTGGAATGTTTTTCCTATGATGtcaataaagatttttttaaacaaagatgtctatagtaaaataacaaacaaacacggtTTTCATTATCCTGCTTTGGAATATCACTGCCTTTTGTTGTCAGTTTATACCTTCATGGGTTTACGATTCAATTGCCTGTTGGCCAAGATCCACAACATCAAATCTAATCTTACCTTAGCCAGTTCTTTTGAAATTCTGTCAGTGTCCTTTCTTCTAAGCACTAATTGAGTTTCAATGCATTGATTACATGCCAAAGATAAACAAGGTTAATATCAACAATaagtaatataaaacaaaactacaggCCTACCTCTTAAGCCCTAACATTTGGATTAGTGTATTTCTACAAGGGCTGGTCTAG

Function

GO: NA

KEGG:

id description
ko04064 NF-kappa B signaling pathway
ko04650 Natural killer cell mediated cytotoxicity
ko04660 T cell receptor signaling pathway
ko04658 Th1 and Th2 cell differentiation
ko04659 Th17 cell differentiation
ko05340 Primary immunodeficiency

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36298 lncRNA upstream 290750 44768677 ~ 44816663 (+) True G28991
TU36303 lncRNA upstream 308950 44795924 ~ 44798463 (+) True G28995
TU36252 lncRNA upstream 357505 44691541 ~ 44749908 (+) True G28956
TU36226 lncRNA upstream 1050805 44053965 ~ 44056608 (+) True G28931
TU36138 lncRNA upstream 1211462 43894185 ~ 43895951 (+) False G28862
TU36485 lncRNA downstream 232236 45353716 ~ 45354079 (+) True G29148
TU36491 lncRNA downstream 256531 45378011 ~ 45378353 (+) True G29153
TU36579 lncRNA downstream 418289 45539769 ~ 45542206 (+) True G29223
TU36682 lncRNA downstream 604503 45725983 ~ 45734261 (+) True G29271
TU36703 lncRNA downstream 766469 45887949 ~ 45888412 (+) True G29291
AMCG00008177 mRNA upstream 71386 45023148 ~ 45036027 (+) False AMCG00008177
AMCG00008178 mRNA upstream 87507 45012765 ~ 45019906 (+) True AMCG00008178
AMCG00008179 mRNA upstream 94791 44998229 ~ 45012622 (+) True AMCG00008179
AMCG00008171 mRNA upstream 158207 44945752 ~ 44949206 (+) True AMCG00008171
AMCG00008170 mRNA upstream 332939 44773068 ~ 44774474 (+) True AMCG00008170
AMCG00008185 mRNA downstream 25917 45147397 ~ 45151336 (+) False AMCG00008185
AMCG00008188 mRNA downstream 107162 45228642 ~ 45232701 (+) True AMCG00008188
AMCG00008186 mRNA downstream 118458 45239938 ~ 45242352 (+) True AMCG00008186
AMCG00008187 mRNA downstream 124473 45245953 ~ 45269832 (+) True AMCG00008187
AMCG00008193 mRNA downstream 206683 45328163 ~ 45336254 (+) True AMCG00008193
TU36366 other upstream 70997 45023148 ~ 45036416 (+) True AMCG00008177
TU35919 other upstream 1805991 43292596 ~ 43301422 (+) False AMCG00008132
TU35886 other upstream 1958370 43146773 ~ 43149043 (+) False AMCG00008120
TU35844 other upstream 1999171 43105713 ~ 43108242 (+) True G28636
TU35555 other upstream 3114036 41992859 ~ 41993377 (+) True G28395
TU36420 other downstream 27949 45149429 ~ 45171828 (+) True AMCG00008185
TU36476 other downstream 219116 45340596 ~ 45343914 (+) False AMCG00008194
TU36524 other downstream 319033 45440513 ~ 45441064 (+) True G29183
TU36777 other downstream 1146411 46267891 ~ 46268327 (+) True G29353
TU36848 other downstream 2458733 47580213 ~ 47586235 (+) True G29418

Expression Profile