RNA id: AMCG00008205


Basic Information

Item Value
RNA id AMCG00008205
length 1710
RNA type mRNA
GC content 0.58
exon number 8
gene id AMCG00008205
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 45443938 ~ 45468459 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgtcCCAGTCCAGATCCAGGCACCTGTATTACTTTGGGGCTTTGTGCCGAAGGGGGTCTGGAGGCCTGCAGTCTCACTGGGAGGCTCTCTTTGATATCCATGGCATCCAGAGCCAGGGACTTCCACAACTTCTTCATGGGCAGCCAATGGTGCTGGGAAGGGAGGAGAGTGTTATATTAGTAAATAAGGGACGCAATATCCTCAGCATGCACCGTGAAGACCACAGTGCGCTCCGTTGGAAAGAAAGTGAGAGGAGAAGACAACAAATCCAGCTGGCTTCTGAGACCTTTCCAGAGTCTCTCTTTCCTGCACCTTATAAAgttTGCAGGAAGGGAGATGCACTAGCTTGCCGCATCCAGAGGCTGTTTGGTGATTACGACAGAGTGATGAACCCAATTGGAGGCAAGGGTCTTGAGAAGCCCATTGCGGTCCCCAAACCCACTGTGACCCTGGAGAAGAAATCCACCCGGTCATTTCTTGGGGAGCAGCAGCGCCATCGGTCCAGGTTCCCCTGCGACCGCAAAGCCCACAGGGGCGCTCCCTCCCACAGCCACTCACTCGCACCCAACAGGCAGCACTCCAGCCAGGCTTTCCTCCCAAAGCTTGGCTCCAGGATGCAGAAGCCCACAGCCTGTGTGCGCCCTGTGGATGGCCAGAAAGCTAAACCCAAGACATCATCTGAAAACCGCAGTCAGGTGCGCAGCAGCAGCGTGAGAGACAAGAAGTCCGGCAGCAAGGCGTCTCTTTCCAAACTTAACATCCCGTCCCAGCCACTGGAGTGCAGAGTGAAGGACCCAATTGGAGACAAGGGTCTTGAGAAGCCCATTATGGTCCCCAAATCCACTGTGACCCCGGAGAAGAAATCCACACGGTCATTTCTTGGGGAGCAGCAGCGCCATCGGTCCAGGTTCCCCTGCGACCGCAAAACCCACAGGGGCGCTCCCTCCCACAGCCACTCACTCGCACCCAACAGGCAGCACTCCAGCCAGGCTTTCCTCCCAAAGCTCGACTCCAGGATGCAGAAGCCCACAGCCTGTGTGCACCCTGTGGATGGCCAGAAAGCTAAACCCAAGACGTCGTCTGAAAACCGCAGTCGGGCGCACAGCAGCAGTGTGAGAGACAAGAAGTCCGGCAGCAAGGCGTCTCTTTCCAAGCTTAACATCCCGTCCCAGCCGCTGGAGGCGTCCGTGTCCAGAGAGGCCAGTTGTATGGATGCAATCTTAAAGGACGGTGAAAAGCTTCCCTTTGGGCAGCTCAACAGCAAGTCCTACCTCTCACTCTACTGGCTCCTGATTGCTGTACATATCCTAAGCAGCCCCTTCACAGCAGCAGGTCTCCCAGCAGGGAGGCCTGGGCTGCAGCAGGAGATACAGAGCCGTACAGCAGAGTCACACATCGCTcactccctgcctctccctccaCACCATACAGCTGCCTGTATAGGACACATGGACATGGACAACTCTGTAGAGAAAAGTACAGCGCACCCCAAGGCCGGAGGGCCAGGGTGTGTTGTGCTGTCGGGCGCAGGGCTGGGGCAGCATGTGGGGCAGGCTGGGCTGCTGGGCGCTGGGGCTCAGGACAGGATGAGGGCTCGGTTGGTGGGGTTGGGGTTCAGCGAGCGCAGGTACCGCCTGGCCTTCTCCGTCATGATGAGCTGGTCCTTTGTCCGGCCGCACACCACCGCCTCCCAGGCCTGGGACATCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36491 lncRNA upstream 65585 45378011 ~ 45378353 (+) True G29153
TU36485 lncRNA upstream 89859 45353716 ~ 45354079 (+) True G29148
TU36298 lncRNA upstream 627275 44768677 ~ 44816663 (+) True G28991
TU36303 lncRNA upstream 645475 44795924 ~ 44798463 (+) True G28995
TU36252 lncRNA upstream 694030 44691541 ~ 44749908 (+) True G28956
TU36579 lncRNA downstream 71310 45539769 ~ 45542206 (+) True G29223
TU36682 lncRNA downstream 257524 45725983 ~ 45734261 (+) True G29271
TU36703 lncRNA downstream 419490 45887949 ~ 45888412 (+) True G29291
TU36736 lncRNA downstream 624449 46092908 ~ 46093489 (+) True G29320
TU36779 lncRNA downstream 800216 46268675 ~ 46268989 (+) True G29355
AMCG00008204 mRNA upstream 20511 45416277 ~ 45423427 (+) True AMCG00008204
AMCG00008200 mRNA upstream 35475 45400869 ~ 45408463 (+) True AMCG00008200
AMCG00008199 mRNA upstream 44070 45375965 ~ 45399868 (+) True AMCG00008199
AMCG00008194 mRNA upstream 100073 45340574 ~ 45343865 (+) True AMCG00008194
AMCG00008193 mRNA upstream 107684 45328163 ~ 45336254 (+) True AMCG00008193
AMCG00008198 mRNA downstream 16171 45484630 ~ 45486967 (+) True AMCG00008198
AMCG00008210 mRNA downstream 20173 45488632 ~ 45488966 (+) True AMCG00008210
AMCG00008211 mRNA downstream 130741 45599200 ~ 45638789 (+) True AMCG00008211
AMCG00008212 mRNA downstream 240109 45708568 ~ 45714043 (+) True AMCG00008212
AMCG00008218 mRNA downstream 398884 45867343 ~ 45911607 (+) True AMCG00008218
TU36524 other upstream 2874 45440513 ~ 45441064 (+) True G29183
TU36476 other upstream 100024 45340596 ~ 45343914 (+) False AMCG00008194
TU36420 other upstream 272110 45149429 ~ 45171828 (+) True AMCG00008185
TU36366 other upstream 407522 45023148 ~ 45036416 (+) True AMCG00008177
TU35919 other upstream 2142516 43292596 ~ 43301422 (+) False AMCG00008132
TU36777 other downstream 799432 46267891 ~ 46268327 (+) True G29353
TU36848 other downstream 2111754 47580213 ~ 47586235 (+) True G29418
TU36851 other downstream 2126645 47595104 ~ 47595686 (+) True G29421
TU36868 other downstream 2158837 47627296 ~ 47671421 (+) False AMCG00008232
TU36872 other downstream 2163731 47632190 ~ 47637376 (+) True AMCG00008232

Expression Profile