RNA id: AMCG00008279


Basic Information

Item Value
RNA id AMCG00008279
length 5174
RNA type mRNA
GC content 0.42
exon number 6
gene id AMCG00008279
representative False

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 49839512 ~ 49858576 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGCCTCTAGTGGAGAGCACTTACACATGCatcttgcaattgcaaaaaaaaaaaaaaaaaagttagtaaCTTGTAAATTCTTTGCCACGTAGCATCGACTTCCTGAAGAAGTCCTGAACTGTTATCCGCTCCCGGGGATTATTCTTGAATGTGGCTCTGCAAGAACACGTCATTTCACTGCTCTGAAGACAAATCTTTCAGAAACTTCCCAAAATTAAGTGGTGAGATGAATCTACACATACTAAGCAAGTCTAACAGGATGACCCTAGACCCCGATACCTCCCGAGTTTGTGCTTGAAATCCCTGTTTTAAAAGTTCCAAATTTCAGGAGCTCATAAACATGGGTTGCTCCATCTTGTTTCTCTCCTCAGCTGTGTCCACACTGGGCGGCTTGGTGTTCGGGTACGAGTTGGGCATCATCTCCGGGGTGCTTCTTCAGCTTCAGACGGAATTCCACCTCAGCTGCTTGCAACAAGAAGTAGTGGTGAGCGCTCTTCTGCTGGGTGCTCTCTCGGCCTCCCTGATTGGCGGGGTTCTGATTGACTGCCAAGGCCGCCGGAACTCCATTCTCCTCAGCACTCTGCTCATCCTGGGCGGCAGCCTGATTCTCACACTCAGTGGGTCCGTTTTCTTCCTGGTGGCTGGCCGCATTGTGGTCGGCTTTGCCATGTCCATCTCCTCCATGTCCTGCTGCATCTTCATTTCTGAGATGGTCAGCCCCCAGCGCAGAGGCCTGCTGGTGACCTTGTACGAAGCTGGCATCACCATTGGCATTCTGACCGCCTACGCTATGAACTACGTCTTATCCGACTTCAAAGGTGGCTGGAGGTATATGTTTGGGTTGGTCACAGTCCCGTCTTTGGTTCAGTTTGGGGCCATTTGCTTCCTCCCAAGCCATTCTGGAAGCCAAGTTAAAGTCACCCAGGAGGCCCCAAACCAGATTCAGTTAACCTCTGCCGGAGAGACAGAAGATGGTCCTACCCTTAAAGTTGCTGGCCAGTGTTACACTATCTTGAATCTCTTTCAGGCCAAAGACAACATGAGAAGCAGGACACTTATAGGCCTTGGATTGGTGCTCTTTCAGCAGTTTACAGGACAGCCCAATGTCTTGTTCTACGCCTCCACTATCTTTCACTCAGTGGGGTTTCAAAGCGACGCCTCCGCAGTCTTGGCTTCTGTTGGCCTGGGAGCAGTGAAGGTCATTGCCACCTTGATCTCCATGAGCTGTGCTGACAGGGTGGGTCGACGGGCGCTGCTGATAGGCGGATGCGTTGTGATGTCAGCATCCGTGACGGCGATTGGTCTTTTAAGCCAACACAATTTCCTTCACCCCAGGCACACTTGCAGTGCAGACAATCACTTACAAAGCAGTTTGTCCTCCACAGCAAAGCCCACATTAATACTTGACCCTCACACTCTTCCAACTACTTATCACAGCTTTGAAAGGACAAAGGCCAGTGCGAAGGATATTGCTGTTTTAGGGGCGTCAGGTGTTTCGCAATCCTATTCAGTGCCCCAGCTGTCCTCAATGGAAAACTCACCAAATTCAACCCAGGGGACTGAAATTTACTCCAAGCTTGTAAAACACAGAATAGTAAATTGGATCACCTTACTCAGTATGATGGCATTTGTGAGTGCATATTCAGTTGGATTTGGTCCAATGACCTGGCTGGTTCTTAGCGAGATATTTCCTGCTGCAGTGAGAGGGAGAGCATTTGCCTTCACCAACTGCTTTAACTGGGCTGCACATTTAATCGTGACTTTTACCTTCCTGAATGTAATTGATACTTTAGGTCTGTCTTGGACATTCCTGCTCTATGGAATGACTGGAGTTCTTGCAGTGGTGTTTATTTACCTCCTGCTGCCTGAAACTAAAGGAAAGTCCCTTGAGGAAATAGATAAGGAGCTTTCTGGCAAAAGGTCATATCACAGAGGCAATTGCTGCCACGTGTGTTGCAGGAAAAGGATTTCTTCAGCCGGGTATCAAAGAGTTGAGCTCATGAAGTCAGGAGAGTAACAGTAATCAACTGCAGGCCAAAAAACTGTACAAAGTGCAATAGAAGAAATGTAATCCCAAGTGCTATAATACAAATGTCACAtgctttaagaaaaatacaaataaaagtctGCCCTACACTAAAACATAAAGGACACAAACATTTTGTTCTTTGCTCCAGGAATTTCTTAATGGCATACAGTGAAGCTCAGCCATCCCCAAATGTTTTGGtataacatatacatacacagtgacTGAAATCAGTCAGACCAAGACAATTCACCAATGGAATGAACTGAATACCACAATAGTGGAGAGGGGCTTTCACAAAGTTTGAATTGTGCTGGCTTTTCCacgaaagggaaaaaaatgacaacaaatataataatgactAATGAGAGTAAATGTACCAGAATCTAGGTAAGATCAAGAGCAGATGAAGACTGAGGGGAGTTTGGAAGAGTAGGGAAATGAGAGCAGGAAACACAGACTCAAAAGTACAAGTTAGAAAATAAACTGGTCTGGAGCTTGGCATTCACTTGAGACCTGGAATCAAAGAAGTAATGTTGCACAGAGAAGGATAGCAGATTAAGTTAATCCAAAGATCTGGTGGTTGGAATAGCTTCTCGTGTGTGTTAGGGTTTCATAATCCTTTTAGCTGTTGTAAAAGGCATGTTTGTAGTGTGTACTTTGCATGTTTTCAATATTGGAAAAGTTCTAGAAATGATTATTCAGATGAATAGCATTATTTATCAGTAATATAATATTCTATACTCCTCTTTAGTTCTGTTCAGTATGGGTTTTCTTCTATTACTTTTGATAATAGAAGTTTCCAGAGCTCTCCAGAAATTATCCAGCAAGTGGGTTTGCCTTTAATTCCattgatttttaaacaaaaatctttATTGACATATGGGTGTGATGTAACGGAGTGGAGGTTCCCAGGCCAGCTCATAAAGCTATATTTATACTAGAACTACTGCCTGTGTAGAGATTAGTTGATGTTAAGCTGCTGAAATTAATTATAGTTGAAGGCCACTGTAAAGGAAATTAGTATCTGCCAAGACAGCAGTTGAAAGAATCATCAGTAATACCTGGGCTAGAGAAGATGTTGAATACTGCTACAGAAATAATTCTATTTTggaagttatttttattttgggctACTGTGATGATGTGGTTTAGACTGAAAGTTTCTGTGGGCATGTATTGTGAAATGAGCCTCTCTGATGTAAGCAGTTAAATGCTAGAATTACACAGTCAAAAAAGGAAAGTTAAAGGAAAGTATTTCCTACCTTGCAGTGTAAGCTTTGTAGAGGGTACAGTGtaaaggtatatatttttttgtgtttttgatgtttGATGGTTTTACTTAAGGGGAGCATACAAGTgttgtgcatttgcatttaaatcaatttttttttaattattatttttttttgttgatgatTCCTGCAACCTCTTAATAACTACAAGCGCAGAGctggtcaatttgaccgatttggttattaaaatttgaattactctgtgttcctaaatacactgtgcatacccgttcgtgacttttactaaatatatgtattaaacatgcctacagcgttttagctgcataaatggagtcagtctggcgctccagTGTTGATCTCTGCCTGTCTACAgactttcatgtgcttgaaaaactcacgcattgtacagcattacaggtgttttcttacaactgtactcagattgagctgatacagtgattacccgcaaataaacatggattggaaacggagattgaagagagcgcattttggacatgccgtgtatatgaacatgactgattcaggggcatcagtgatactggcaatgacagatcattcgtgggtttgtgccagtgttgtgaaaacactgcgagtgaaacgcaggtccaaatggcaccgagtgcttttactctactgatcaatacgcgattgctactgcacagtacatccaccaaaataatgattcacggacattatcagcagaggagcatttattgtgatgctatatattcgtggagtaaaagttttgacctggagaggctgtcaaaatgcagtgtgaggtacgagctcatgcagggaaagcggagaaactgtcctgtgtggactgtacaagctgtcaggtatgcaggctataTATAGTcaataatttattgaaatacaaagctacagtgaataaaagcactatgttgaaaacaaagtttacacggtgttgaaaatgtttacttcagtgtacaattatgtttattgtaaacgcaatagttattttttaacgtttacaattgtttcattatcttattgtatgccattattgagctttttgcttattgtaggttATATAgtaattcatgttttgactgcagtgtgtgggtttagaaaaaagtgctttgtatttatagcaataatattaatgttttatgatcatatttcaatttaaatactgcatttgtgctatgtaagtgttggatttgatgttcatgaataaaacttctgagtttaaTACGATGGCTTGGctttgattgtcatatcacagctgttaaagagctatcggttacaatgaccagCTATGGCGCTTGAAGGTAGTTCAAAATGtcggcacttctagtgttaaagaGTTTAAGAAATacgtttgttttaaaattaaaacttacaacaacaatattgTTCACTCTGTCGAGTGCGTGTTTGATGTTCCCCTGACTTTTCTTATATGGGCAGCACGCAGCATTAAAGACGGCTTTCATGTGGTGGAGCAAACTTATTTGTACGCAGTGGGGAATTGTAATGCTTGGAAAGTccctgtttacacacacacacacatatatatacaccgatcagccataacattatgaccactgacaggtgaagtgaataacactgataatcttgttatcatggcacctgtcagttggtgggatatattaggcagtaagtgaacattttctcctcaaagttgatgtgttagaatcaggaaaaatgggcaagcgtaaggatctgagcaactttgacaagggccaaattgtgatggctagatgactgggtcagagcatctccaaaactgcagctcttgtggggtgttcccagtctgcagtggtcagtacctatcaaaagtggtccaaggaaggaaaagcggtgaaccggcgacagggtcatgg

Function

GO:

id name namespace
GO:0005215 transporter activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37395 lncRNA upstream 2793 49838005 ~ 49839324 (+) True G29883
TU37386 lncRNA upstream 44134 49796444 ~ 49797983 (+) True G29877
TU37362 lncRNA upstream 297386 49544362 ~ 49544731 (+) True G29853
TU37320 lncRNA upstream 462743 49368645 ~ 49379374 (+) False G29823
TU37321 lncRNA upstream 462743 49368645 ~ 49379374 (+) True G29823
TU37507 lncRNA downstream 195137 50053713 ~ 50053971 (+) True G29973
TU37513 lncRNA downstream 236462 50095038 ~ 50095273 (+) True G29979
TU37521 lncRNA downstream 267114 50125690 ~ 50126131 (+) True G29986
TU37525 lncRNA downstream 289073 50147649 ~ 50148723 (+) True G29990
TU37526 lncRNA downstream 297128 50155704 ~ 50156262 (+) True G29991
AMCG00008281 mRNA upstream 245324 49587067 ~ 49596793 (+) True AMCG00008281
AMCG00008280 mRNA upstream 282037 49549906 ~ 49560080 (+) True AMCG00008280
AMCG00008272 mRNA upstream 370502 49469289 ~ 49471615 (+) True AMCG00008272
AMCG00008271 mRNA upstream 435044 49404931 ~ 49407073 (+) False AMCG00008271
AMCG00008270 mRNA upstream 550062 49289241 ~ 49292055 (+) False AMCG00008270
AMCG00008283 mRNA downstream 21403 49879979 ~ 49881352 (+) True AMCG00008283
AMCG00008288 mRNA downstream 464137 50322713 ~ 50356404 (+) True AMCG00008288
AMCG00008291 mRNA downstream 500411 50358987 ~ 50359865 (+) True AMCG00008291
AMCG00008292 mRNA downstream 507868 50366444 ~ 50403958 (+) True AMCG00008292
AMCG00008294 mRNA downstream 592734 50451310 ~ 50460054 (+) True AMCG00008294
TU37330 other upstream 423371 49404856 ~ 49418746 (+) True AMCG00008271
TU37226 other upstream 671100 49163816 ~ 49171017 (+) True AMCG00008263
TU36912 other upstream 1925860 47913868 ~ 47916257 (+) False AMCG00008241
TU36905 other upstream 1951434 47863569 ~ 47890683 (+) False AMCG00008242
TU37559 other downstream 492951 50351527 ~ 50352794 (+) False AMCG00008288
TU37728 other downstream 1568005 51426581 ~ 51428055 (+) True G30166
TU37800 other downstream 2242186 52100762 ~ 52101524 (+) True G30232
TU37873 other downstream 2519753 52378329 ~ 52378776 (+) True G30299
TU37877 other downstream 2522765 52381341 ~ 52382418 (+) True G30300

Expression Profile