RNA id: AMCG00008288



Basic Information


Item Value
RNA id AMCG00008288
length 993
RNA type mRNA
GC content 0.57
exon number 6
gene id AMCG00008288
representative True

Chromosome Information


Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 50322713 ~ 50356404 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGAGCAATCAGGCATTCATCCGGCCTTTCCGGGAGCACCACATCGACCCCACTGCCATCACGCGCCATGACTTCATCGAGACCAACGGTGACAACTGCATGCTGACTCTGGTCCCCCTGGCCAACATGGCCTATAAATTCATGACCCTCTCTCCAGcGGAGCTCTACTACAGCTACCCCTGGGACTGCTATGTGTTCTCCCTGGCCATTTTTGTCACACTCACCAACCAGATCCATAAGTGGTCCCACACCTACTTTGGCCTGCCGCGCTGGGTCACCCTCCTGCAGGACTGCCACATCATCCTGCCCCGAAAACACCACCGCGTCCACCATGTCTCCCCTCATGAGACCTACTTCTGCATAACCACAGGAAAGCGCTGTCAAGAATGGGTCAGTGTCATCATCTGCTTCTCTCTTATGGCCCTCAACTTCTGCCACCTCCTCGCCAACTTCCACCTGAGCCATATCTCCTACATCCTGCTGGGAATAGGTGCTAACTCCCATCCTTGTGGACTCTGTAGATCACTAGTTGCAGGAATTCTGACGGCAGACTTTGCTTCCGGCCTAGTACACTGGGGAGCAGACACCTGGGGTTCTGTGGATGTGCCCATTTTTGGAAAGGATGCAAATGCAAGCGTCCGAGGTGGGTGTGACGCCTACCAAACAGCCTGCGATCGATACCTCACCTGGAGAATAAAGCTCCGCGAGCTCCCGGGCACCTGGATGTTGCGGGCCCCATCGAGGCTCCCCACTGCCCGGCCCCCTATGTTCGGGGTCGCCTTGGGTTCCTTGTCTGTGAACCTCGACTCCGTTCTCTGCTCTCGCCATGTTCCACTGCAGGTCCAACCCCCCACCCGGCAAGCGAACCAACAGGGGCGCCGACATCACGGCCTGACCACGCCTCGTATCTACGATCAGCCACTCCTGACTGGTCAGCTCAACCCTTCCAGCCTATCCACTCCCAGCACCCTATTCCGCTCAGCCAATCGGTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU37546 lncRNA upstream 11504 50308100 ~ 50311209 (+) True G30010
TU37553 lncRNA upstream 48530 50273735 ~ 50274183 (+) True G30017
TU37552 lncRNA upstream 55263 50267223 ~ 50267450 (+) True G30016
TU37526 lncRNA upstream 166451 50155704 ~ 50156262 (+) True G29991
TU37525 lncRNA upstream 173990 50147649 ~ 50148723 (+) True G29990
TU37548 lncRNA downstream 89453 50445857 ~ 50448965 (+) True G30012
TU37622 lncRNA downstream 172129 50528533 ~ 50530747 (+) True G30073
TU37627 lncRNA downstream 179370 50535774 ~ 50535987 (+) True G30078
TU37632 lncRNA downstream 198980 50555384 ~ 50555589 (+) True G30083
TU37650 lncRNA downstream 393976 50750380 ~ 50752307 (+) True G30099
AMCG00008283 mRNA upstream 441361 49879979 ~ 49881352 (+) True AMCG00008283
AMCG00008279 mRNA upstream 464137 49842117 ~ 49858576 (+) False AMCG00008279
AMCG00008281 mRNA upstream 725920 49587067 ~ 49596793 (+) True AMCG00008281
AMCG00008280 mRNA upstream 762633 49549906 ~ 49560080 (+) True AMCG00008280
AMCG00008272 mRNA upstream 851098 49469289 ~ 49471615 (+) True AMCG00008272
AMCG00008291 mRNA downstream 2583 50358987 ~ 50359865 (+) True AMCG00008291
AMCG00008292 mRNA downstream 10040 50366444 ~ 50403958 (+) True AMCG00008292
AMCG00008294 mRNA downstream 94906 50451310 ~ 50460054 (+) True AMCG00008294
AMCG00008296 mRNA downstream 206350 50562754 ~ 50582183 (+) True AMCG00008296
AMCG00008304 mRNA downstream 976899 51333303 ~ 51336685 (+) True AMCG00008304
TU37330 other upstream 903967 49404856 ~ 49418746 (+) True AMCG00008271
TU37226 other upstream 1151696 49163816 ~ 49171017 (+) True AMCG00008263
TU36912 other upstream 2406456 47913868 ~ 47916257 (+) False AMCG00008241
TU36905 other upstream 2432030 47863569 ~ 47890683 (+) False AMCG00008242
TU37728 other downstream 1070177 51426581 ~ 51428055 (+) True G30166
TU37800 other downstream 1744358 52100762 ~ 52101524 (+) True G30232
TU37873 other downstream 2021925 52378329 ~ 52378776 (+) True G30299
TU37877 other downstream 2024937 52381341 ~ 52382418 (+) True G30300

Expression Profile