RNA id: TU37559



Basic Information


Item Value
RNA id TU37559
length 540
RNA type TUCP
GC content 0.46
exon number 2
gene id AMCG00008288
representative False

Chromosome Information


Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 50322713 ~ 50356404 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CCCGTAACAGCATCAAGTAACCAATTGGCCTGGTTAAACTGCAAAATGGTTGTTATTCTTGCAAGGGGTAGCTTCAAAAGAGCGTCCATGGTACTCCTTCAAGACACTCATGAGAAAAtaaccctccctccctccttctccctctctcttgctctctctctatccaGGAAAGCGCTGTCAAGAATGGGTCAGTGTCATCATCTGCTTCTCTCTTATGGCCCTCAACTTCTGCCACCTCCTCGCCAACTTCCACCTGAGCCATATCTCCTACATCCTGCTGGGAATAGTTGCAGGAATTCTGACGGCAGACTTTGCTTCCGGCCTAGTACACTGGGGAGCAGACACCTGGGGTTCTGTGGATGTGCCCATTTTTGGAAAGGTAAAATGTCATGTATGGACTGTGATGCCATGTTGCATAAGACACGATAGACAGTTCTGTCCTGAAACGTGTGTTCTTCTGAAATCAGCTGTATTGTTTAAAGCAGGGAAAACAGGCCTACAGTGTAGTATTTGCttaacatcaacaaaaaaacatattca

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU37546 lncRNA upstream 40318 50308100 ~ 50311209 (+) True G30010
TU37553 lncRNA upstream 77344 50273735 ~ 50274183 (+) True G30017
TU37552 lncRNA upstream 84077 50267223 ~ 50267450 (+) True G30016
TU37526 lncRNA upstream 195265 50155704 ~ 50156262 (+) True G29991
TU37525 lncRNA upstream 202804 50147649 ~ 50148723 (+) True G29990
TU37548 lncRNA downstream 93063 50445857 ~ 50448965 (+) True G30012
TU37622 lncRNA downstream 175739 50528533 ~ 50530747 (+) True G30073
TU37627 lncRNA downstream 182980 50535774 ~ 50535987 (+) True G30078
TU37632 lncRNA downstream 202590 50555384 ~ 50555589 (+) True G30083
TU37650 lncRNA downstream 397586 50750380 ~ 50752307 (+) True G30099
AMCG00008283 mRNA upstream 470175 49879979 ~ 49881352 (+) True AMCG00008283
AMCG00008279 mRNA upstream 492951 49842117 ~ 49858576 (+) False AMCG00008279
AMCG00008281 mRNA upstream 754734 49587067 ~ 49596793 (+) True AMCG00008281
AMCG00008280 mRNA upstream 791447 49549906 ~ 49560080 (+) True AMCG00008280
AMCG00008272 mRNA upstream 879912 49469289 ~ 49471615 (+) True AMCG00008272
AMCG00008291 mRNA downstream 6193 50358987 ~ 50359865 (+) True AMCG00008291
AMCG00008292 mRNA downstream 13650 50366444 ~ 50403958 (+) True AMCG00008292
AMCG00008294 mRNA downstream 98516 50451310 ~ 50460054 (+) True AMCG00008294
AMCG00008296 mRNA downstream 209960 50562754 ~ 50582183 (+) True AMCG00008296
AMCG00008304 mRNA downstream 980509 51333303 ~ 51336685 (+) True AMCG00008304
TU37330 other upstream 932781 49404856 ~ 49418746 (+) True AMCG00008271
TU37226 other upstream 1180510 49163816 ~ 49171017 (+) True AMCG00008263
TU36912 other upstream 2435270 47913868 ~ 47916257 (+) False AMCG00008241
TU36905 other upstream 2460844 47863569 ~ 47890683 (+) False AMCG00008242
TU36904 other upstream 2460844 47889027 ~ 47890683 (+) False AMCG00008242
TU37728 other downstream 1073787 51426581 ~ 51428055 (+) True G30166
TU37800 other downstream 1747968 52100762 ~ 52101524 (+) True G30232
TU37873 other downstream 2025535 52378329 ~ 52378776 (+) True G30299
TU37877 other downstream 2028547 52381341 ~ 52382418 (+) True G30300

Expression Profile