RNA id: TU27821


Basic Information

Item Value
RNA id TU27821
length 763
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G22192
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 8253893 ~ 8254655 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgagccttggctgcccatgaccctgtcgccggttcaccgcttttccttccttccttttcctttttcctgcttcttacacatcaactttgaggacaaaatgttcacttgctgcctaatatatcccacccactgacaggtgccatgataacgagattatcagtgttattcacttcacctgtcagtggtcataatgttatggctgatcggtgtatggaTTTATGGATATATATTAACATAGCCTACCTGTATCTGTATATGCGTTCAATGGCTCTACAATAACTTAATGCACTAATGAGTCATTTACATATCGTTCTTTGCAATCAAGTCATTTGCCACATCGttcttttaaaatttaaatattttattctgtttgtgtagttattacttttattttgtatttgtgtagttctaCTGTTTGACTGAACAATTAAACATAATTGGAAAGTAAATTTGAAGAGTCTTCCCACTTCTAAAAGAGTTTAGGAAAAATGCCCACTGCCACACCCCCCAAAACTCCCACCAACGGTAAAACTGACCACCGCGGTACATTATTCTAAGGTATAACGATATTAAGAATCTGTCACCAGCACAGCCCTACTTTTGATATTTTATGacactgtattttctgtatctttGGCTGCATTTTGTTACCCCATGCTGTCAGTCTTTTAGATTACGCAATAaaatgatgattaaaaaaataaatatgaagcaaactaaaaatgaatctccttcacttttttttttttttttttttttttt

Function

GO: NA

KEGG:

id description
ko04913 Ovarian steroidogenesis
ko04927 Cortisol synthesis and secretion

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU27779 lncRNA upstream 70472 8180672 ~ 8183421 (+) False AMCG00007232
TU27780 lncRNA upstream 70472 8180672 ~ 8183421 (+) False AMCG00007232
TU27781 lncRNA upstream 70472 8180672 ~ 8183421 (+) False AMCG00007232
TU27784 lncRNA upstream 70472 8180672 ~ 8183421 (+) False AMCG00007232
TU27671 lncRNA upstream 352718 7900779 ~ 7901175 (+) True G22076
TU27834 lncRNA downstream 176447 8431102 ~ 8431862 (+) False AMCG00007242
TU27835 lncRNA downstream 190270 8444925 ~ 8445550 (+) True G22204
TU27839 lncRNA downstream 195429 8450084 ~ 8450494 (+) True G22208
TU27840 lncRNA downstream 196112 8450767 ~ 8450978 (+) True G22209
TU27841 lncRNA downstream 196587 8451242 ~ 8451582 (+) False AMCG00007242
AMCG00007241 mRNA upstream 2074 8242184 ~ 8251819 (+) True AMCG00007241
AMCG00007245 mRNA upstream 32257 8217578 ~ 8221636 (+) True AMCG00007245
AMCG00007244 mRNA upstream 48772 8187419 ~ 8205121 (+) True AMCG00007244
AMCG00007232 mRNA upstream 72313 8147398 ~ 8181580 (+) True AMCG00007232
AMCG00007231 mRNA upstream 152105 8098065 ~ 8101788 (+) True AMCG00007231
AMCG00007243 mRNA downstream 131415 8386070 ~ 8395869 (+) False AMCG00007243
AMCG00007242 mRNA downstream 176534 8431189 ~ 8451277 (+) True AMCG00007242
AMCG00007252 mRNA downstream 417834 8672489 ~ 8687381 (+) True AMCG00007252
AMCG00007253 mRNA downstream 443328 8697983 ~ 8710500 (+) False AMCG00007253
AMCG00007250 mRNA downstream 496512 8751167 ~ 8762076 (+) True AMCG00007250
TU27445 other upstream 874947 7374323 ~ 7378946 (+) True G21891
TU26964 other upstream 2673599 5565941 ~ 5580294 (+) False AMCG00007148
TU26961 other upstream 2683814 5565941 ~ 5570079 (+) False AMCG00007148
TU26962 other upstream 2683814 5565941 ~ 5570079 (+) False AMCG00007148
TU26956 other upstream 2691739 5558805 ~ 5562154 (+) True AMCG00007147
TU27825 other downstream 112781 8367436 ~ 8396242 (+) True AMCG00007243
TU27900 other downstream 450002 8704657 ~ 8711311 (+) True AMCG00007253
TU28037 other downstream 1181869 9436524 ~ 9499728 (+) True G22372
TU28420 other downstream 2356541 10611196 ~ 10613104 (+) True AMCG00007307
TU28829 other downstream 6224018 14478673 ~ 14489692 (+) True AMCG00007337

Expression Profile