RNA id: TU27835



Basic Information


Item Value
RNA id TU27835
length 626
lncRNA type intronic
GC content 0.38
exon number 1
gene id G22204
representative True

Chromosome Information


Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 8444925 ~ 8445550 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


TGAAGATAAAGCTACCTTTggggttattatttattttttcttttaaaaacactgcttcTTTCCAGATTTTTACTTTATACCATGTGCTGTATATGTGCCGGGCCTCTACACTTACGATCGTTGTCGTGGATGATCTGGAAATTCTTCACTGAGGCTTGTGTGACTCTGCCGTGGAAATTGAGGACGTAGGACTGCGTGTCATCATTCCAGACGGGCGTTTTGTTGTGGAGCTCAATCACACTCTCCGTGTTCTTGTTCTGCCATCTCGCCAGCAGAGACTCGTGGTCCTGATAGATTACAGACAGGAAGAAGTGGACGTCACAAGCAAAACAAagccatgttttttgtgttttttctcctcaATTCCTGGATACAAAGCTTAACAATtgcacgcacacatacacaacgtCATATTAAAGATTTTCTATAAAGGCATACCTTTAACAAAacttttaatacatataatcaCAAGTTAAAATCAGTAAAGATTTGGGGGggaatcaaaaacaaatatgggtCCCAGAGGATTACTGGTTCTTCCTGAGGATAActcatcattttgtaatttgcaatcatttaaatttaatctggaTCATGgtccattacattttaatagcaaAATAACA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU27834 lncRNA upstream 13063 8431102 ~ 8431862 (+) False AMCG00007242
TU27821 lncRNA upstream 190270 8253893 ~ 8254655 (+) True G22192
TU27779 lncRNA upstream 261504 8180672 ~ 8183421 (+) False AMCG00007232
TU27839 lncRNA downstream 4534 8450084 ~ 8450494 (+) True G22208
TU27840 lncRNA downstream 5217 8450767 ~ 8450978 (+) True G22209
TU27841 lncRNA downstream 5692 8451242 ~ 8451582 (+) False AMCG00007242
TU27842 lncRNA downstream 38712 8484262 ~ 8484504 (+) True G22211
TU27843 lncRNA downstream 46611 8492161 ~ 8492457 (+) True G22212
AMCG00007243 mRNA upstream 49056 8386070 ~ 8395869 (+) False AMCG00007243
AMCG00007241 mRNA upstream 193106 8242184 ~ 8251819 (+) True AMCG00007241
AMCG00007245 mRNA upstream 223289 8217578 ~ 8221636 (+) True AMCG00007245
AMCG00007244 mRNA upstream 239804 8187419 ~ 8205121 (+) True AMCG00007244
AMCG00007232 mRNA upstream 263345 8147398 ~ 8181580 (+) True AMCG00007232
AMCG00007252 mRNA downstream 226939 8672489 ~ 8687381 (+) True AMCG00007252
AMCG00007253 mRNA downstream 252433 8697983 ~ 8710500 (+) False AMCG00007253
AMCG00007250 mRNA downstream 305617 8751167 ~ 8762076 (+) True AMCG00007250
AMCG00007251 mRNA downstream 332419 8777969 ~ 8784734 (+) True AMCG00007251
AMCG00007254 mRNA downstream 435334 8880884 ~ 8957404 (+) True AMCG00007254
TU27825 other upstream 48683 8367436 ~ 8396242 (+) True AMCG00007243
TU27445 other upstream 1065979 7374323 ~ 7378946 (+) True G21891
TU26964 other upstream 2864631 5565941 ~ 5580294 (+) False AMCG00007148
TU26961 other upstream 2874846 5565941 ~ 5570079 (+) False AMCG00007148
TU27900 other downstream 259107 8704657 ~ 8711311 (+) True AMCG00007253
TU28037 other downstream 990974 9436524 ~ 9499728 (+) True G22372
TU28420 other downstream 2165646 10611196 ~ 10613104 (+) True AMCG00007307
TU28829 other downstream 6033123 14478673 ~ 14489692 (+) True AMCG00007337
TU28988 other downstream 6840947 15286497 ~ 15287960 (+) False AMCG00007352

Expression Profile