RNA id: TU28246



Basic Information


Item Value
RNA id TU28246
length 284
lncRNA type read_through
GC content 0.39
exon number 2
gene id G22528
representative False

Chromosome Information


Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 10152489 ~ 10241408 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


tttttttttttaaTGTTGtaggtattttttaataagaaaattgattgttttgtttttacatttattttaagaatgacGGCTGTGCGGGTCATTGAATTTCCCGGGTCTCCAGGCAtgatataaatgcatttctctcGGTCCGGCTTGCTGGCCCGTAAGGACTTTCATCGTCGTTTGTAGTTTTCCAGGTTGGCGAGGATCCAGCCAGAGGGAACCAAGATGGTAGCAAACATAGCGACCAAGGCGATACCTTGTTCCTGAAATTATTAAAAGATTTCATCATA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU28168 lncRNA upstream 210601 9936920 ~ 9941888 (+) False AMCG00007278
TU28104 lncRNA upstream 507742 9642597 ~ 9644747 (+) True G22417
TU28040 lncRNA upstream 659822 9488712 ~ 9492667 (+) True G22373
TU28027 lncRNA upstream 756009 9396221 ~ 9396480 (+) True G22364
TU28004 lncRNA upstream 813389 9335718 ~ 9339100 (+) True G22344
TU28342 lncRNA downstream 80604 10320469 ~ 10321858 (+) True G22596
TU28422 lncRNA downstream 386809 10626674 ~ 10685068 (+) True G22652
TU28495 lncRNA downstream 871478 11111343 ~ 11111723 (+) True G22712
TU28504 lncRNA downstream 989960 11229825 ~ 11230393 (+) True G22720
TU28516 lncRNA downstream 1272288 11512153 ~ 11522358 (+) True G22730
AMCG00007287 mRNA upstream 66343 10073788 ~ 10086146 (+) True AMCG00007287
AMCG00007286 mRNA upstream 81021 10067231 ~ 10071468 (+) True AMCG00007286
AMCG00007278 mRNA upstream 187222 9937022 ~ 9965267 (+) True AMCG00007278
AMCG00007275 mRNA upstream 219546 9930888 ~ 9932943 (+) True AMCG00007275
AMCG00007277 mRNA upstream 226537 9921869 ~ 9925952 (+) True AMCG00007277
AMCG00007293 mRNA downstream 55693 10295558 ~ 10310817 (+) True AMCG00007293
AMCG00007292 mRNA downstream 103837 10343702 ~ 10357605 (+) True AMCG00007292
AMCG00007301 mRNA downstream 134105 10373970 ~ 10383283 (+) True AMCG00007301
AMCG00007300 mRNA downstream 154300 10394165 ~ 10420911 (+) True AMCG00007300
AMCG00007303 mRNA downstream 294292 10534157 ~ 10577164 (+) True AMCG00007303
TU28037 other upstream 652761 9436524 ~ 9499728 (+) True G22372
TU27900 other upstream 1441178 8704657 ~ 8711311 (+) True AMCG00007253
TU27825 other upstream 1756247 8367436 ~ 8396242 (+) True AMCG00007243
TU27445 other upstream 2773543 7374323 ~ 7378946 (+) True G21891
TU26964 other upstream 4572195 5565941 ~ 5580294 (+) False AMCG00007148
TU28420 other downstream 371331 10611196 ~ 10613104 (+) True AMCG00007307
TU28829 other downstream 4238808 14478673 ~ 14489692 (+) True AMCG00007337
TU28988 other downstream 5046632 15286497 ~ 15287960 (+) False AMCG00007352
TU29675 other downstream 7958903 18198768 ~ 18201960 (+) True AMCG00007417
TU29676 other downstream 7967213 18207078 ~ 18208308 (+) True G23698

Expression Profile