RNA id: TU28547


Basic Information

Item Value
RNA id TU28547
length 255
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G22756
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 11723492 ~ 11723746 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

taaaacatcccccacaccattacaccaccaccaccagcctgcacagtggtggcatgatggatccatgttctcattctgtttacGCCAAATTCTGACTCTACCATCTGAATGTCTCAACAGAAATGGagactcatcagaccaggcaacatttttccagtcttcaactgtccaattttggtgagcttgtgcaaattgtagcctctttttcctatttgtagTGGAGATGAGTGGTACCCGGTGGGGTCGTTTGCTGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU28532 lncRNA upstream 149630 11570952 ~ 11573862 (+) True G22741
TU28528 lncRNA upstream 181968 11540983 ~ 11541524 (+) True G22738
TU28516 lncRNA upstream 201134 11512153 ~ 11522358 (+) True G22730
TU28504 lncRNA upstream 493099 11229825 ~ 11230393 (+) True G22720
TU28495 lncRNA upstream 611769 11111343 ~ 11111723 (+) True G22712
TU28551 lncRNA downstream 89119 11812865 ~ 11813093 (+) True G22760
TU28560 lncRNA downstream 141690 11865436 ~ 11866024 (+) True G22769
TU28561 lncRNA downstream 142417 11866163 ~ 11866484 (+) True G22770
TU28564 lncRNA downstream 153759 11877505 ~ 11877862 (+) True G22773
TU28566 lncRNA downstream 155654 11879400 ~ 11879606 (+) True G22775
AMCG00007311 mRNA upstream 119774 11588634 ~ 11603718 (+) True AMCG00007311
AMCG00007310 mRNA upstream 945785 10758834 ~ 10777707 (+) True AMCG00007310
AMCG00007306 mRNA upstream 979817 10739045 ~ 10743675 (+) True AMCG00007306
AMCG00007305 mRNA upstream 1056197 10660181 ~ 10667295 (+) True AMCG00007305
AMCG00007308 mRNA upstream 1068503 10628350 ~ 10654989 (+) True AMCG00007308
AMCG00007317 mRNA downstream 1818010 13541756 ~ 13551121 (+) True AMCG00007317
AMCG00007321 mRNA downstream 1899398 13623144 ~ 13624807 (+) True AMCG00007321
AMCG00007322 mRNA downstream 1922881 13646627 ~ 13647013 (+) True AMCG00007322
AMCG00007328 mRNA downstream 2251559 13975305 ~ 13981853 (+) True AMCG00007328
AMCG00007327 mRNA downstream 2325647 14049393 ~ 14064082 (+) True AMCG00007327
TU28420 other upstream 1110388 10611196 ~ 10613104 (+) True AMCG00007307
TU28037 other upstream 2223764 9436524 ~ 9499728 (+) True G22372
TU27900 other upstream 3012181 8704657 ~ 8711311 (+) True AMCG00007253
TU27825 other upstream 3327250 8367436 ~ 8396242 (+) True AMCG00007243
TU27445 other upstream 4344546 7374323 ~ 7378946 (+) True G21891
TU28829 other downstream 2754927 14478673 ~ 14489692 (+) True AMCG00007337
TU28988 other downstream 3562751 15286497 ~ 15287960 (+) False AMCG00007352
TU29675 other downstream 6475022 18198768 ~ 18201960 (+) True AMCG00007417
TU29676 other downstream 6483332 18207078 ~ 18208308 (+) True G23698
TU29705 other downstream 6566362 18290108 ~ 18292338 (+) True G23724

Expression Profile