RNA id: TU28701



Basic Information


Item Value
RNA id TU28701
length 745
lncRNA type inter_gene
GC content 0.29
exon number 1
gene id G22893
representative True

Chromosome Information


Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 13676957 ~ 13677701 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GGAAAATCATTTatattactttacatttatacatttcttagaaAACATCATACAAATCATATTACAAggtaacaaaaccaaaatacaggattgattataaaataaaagtttgaaaGTTGAAttagaaaatagaaataatgtACCTCATTTTGAGGATAAGCTGTATTCCTTCAATGtgaattgtttgttgtttaagaAGCATAAAGAAAAGATTCTTGGCCCCAGCATTTAACAAAGGGTTATTCAGGTTGACCATATAATTGATACCAGATTGGTTATTACCACAGTGacaattgtgtatttataaatctatttatttgttctttggtATATTGGAAGCTTGAAGACTAACCTTAGAATGATTAATGAAAtgctaaatcaaattaaatacactgtTTCCAGATTCAGGACACTTAAGTTGCCAACCAACCTTATCTAATTGAGCCACTCGATTGTATTGATGTGGTCCTCCGTCAAAAAACCTATAAACCCAATGGGTCATCTGTCTCATGGACTGGATAACACAATAAGGGAACACAAAAGTGTAAGTGTATGTTCTGTTTGAAGTATAAACATTTCagcaaaataagtaataataacaacaataatttatGGTAACAAGCAGTTATTATACATAGCtcaattattatcattattaattattatttcactttcaatttaaaatcttttaaattaatgaaataccaaggaaagacttgaaaaactgaaaactaccTAGAAATGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU28695 lncRNA upstream 39333 13637424 ~ 13637624 (+) True G22888
TU28694 lncRNA upstream 44997 13631546 ~ 13631960 (+) True G22887
TU28640 lncRNA upstream 184623 13483495 ~ 13492334 (+) True G22844
TU28634 lncRNA upstream 322501 13353613 ~ 13354456 (+) True G22839
TU28632 lncRNA upstream 325038 13351626 ~ 13351919 (+) True G22837
TU28748 lncRNA downstream 267937 13945638 ~ 13946065 (+) True G22930
TU28750 lncRNA downstream 344390 14022091 ~ 14022317 (+) True G22932
TU28753 lncRNA downstream 363091 14040792 ~ 14041060 (+) True G22935
TU28761 lncRNA downstream 387249 14064950 ~ 14065208 (+) True G22940
TU28765 lncRNA downstream 387670 14065371 ~ 14065644 (+) True G22944
AMCG00007322 mRNA upstream 29944 13646627 ~ 13647013 (+) True AMCG00007322
AMCG00007321 mRNA upstream 52150 13623144 ~ 13624807 (+) True AMCG00007321
AMCG00007317 mRNA upstream 125836 13541756 ~ 13551121 (+) True AMCG00007317
AMCG00007311 mRNA upstream 2073239 11588634 ~ 11603718 (+) True AMCG00007311
AMCG00007310 mRNA upstream 2899250 10758834 ~ 10777707 (+) True AMCG00007310
AMCG00007328 mRNA downstream 297604 13975305 ~ 13981853 (+) True AMCG00007328
AMCG00007327 mRNA downstream 371692 14049393 ~ 14064082 (+) True AMCG00007327
AMCG00007329 mRNA downstream 480483 14158184 ~ 14185574 (+) True AMCG00007329
AMCG00007332 mRNA downstream 688007 14365708 ~ 14383919 (+) True AMCG00007332
AMCG00007335 mRNA downstream 761625 14439326 ~ 14473693 (+) True AMCG00007335
TU28420 other upstream 3063853 10611196 ~ 10613104 (+) True AMCG00007307
TU28037 other upstream 4177229 9436524 ~ 9499728 (+) True G22372
TU27900 other upstream 4965646 8704657 ~ 8711311 (+) True AMCG00007253
TU27825 other upstream 5280715 8367436 ~ 8396242 (+) True AMCG00007243
TU27445 other upstream 6298011 7374323 ~ 7378946 (+) True G21891
TU28829 other downstream 800972 14478673 ~ 14489692 (+) True AMCG00007337
TU28988 other downstream 1608796 15286497 ~ 15287960 (+) False AMCG00007352
TU29675 other downstream 4521067 18198768 ~ 18201960 (+) True AMCG00007417
TU29676 other downstream 4529377 18207078 ~ 18208308 (+) True G23698
TU29705 other downstream 4612407 18290108 ~ 18292338 (+) True G23724

Expression Profile